Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01219 ATGGCATCATCCAAGTTTGAAATCGCTTCTTCATCTCCGTTTGGTTGTGTTTTGACTTTAAAGAACCATAATGATTGTGATGCATGCATTACACATCCCAAAAACAAGGTGAGAGACCATGTTAACACTTGCAACGCTGTTCTCATCTCCTCTGATTCAACACCTAATCAGAACAATAAAAAACCAACATGGGTTTCAAGAGTTGCTAAAAACAACAACTCTGAAAGCCTAAATTTCACAAGAAGGTTTCATAATATATTTGGAGACAAATATGATTCTTCATTATCTGCATTGGTGAGTCCAAGGCATTCAAAGACTATTGATCGTTGGGCTGCAAGGCAAGCTCGAGAAGTAACAAAAAATATGGAGAATAATGAAGGTGTTGTTCATGATGTGTTGCAAATTTTTCCTTCAAGGTCATCAAGTTTCAATTCCAGAAGAGACAGAGAAGTTTCTGTTTCCCCTCCTCGTTCTGATAGTTCATTTGAAAGTGAAAAAACATCAAACCTTGGTGCTTCTTCCCTTGTTCAAATATGGGAAAAAAGGCTCAACCAATCCAATTGCACAAACCAGAATGAGACGTCAGTTGGAAGAACTAATTCTGATGCAAGCAGCAATGAAATGAATGCATTTTATGTAGAAGAACATAATAAAGTCTTAGAAGAAGGAGAATCGTGTGATGAACCATTTTCGGATTGGGAATATGATAAAACAGGACAAAGTAGTGGTCAACCTTGTTCACCAAAACTGCATTGTAATTCAGATGCTGCTGAAAGTGAGAGGAGCAGGGTTGCTGATATCATCAAGAAACTCTCAGTAACAAATCAAATGCAAGGTGATGACAATGATCACGAGGTGAGTAATATTAATGTGACTAGTTCTCCATATAGAGAGCGTGATCGTGCTTTTACACCAAAACAATTAGTAGAAGAAAAAGGTTTTTGTCAGGTCACAAGTTCCCCACGGATTAGAGGGCGTCAAGCATTCAATGATTTGATTATGCAATTTGAGAGTGATCGACGTGGAGAGCTCAACAATCTTGTCGAGCGTGGTGCGGTTTCTAAGTTTACACAAAGAGGTCGTATTCAGTCATTACTTCGACTTAGATTGTTGCAACGTGGAGTAGCAGCTTTTGATCCATCACACCCAAAATCAACGACATTTGAAGGGAACAAACAACTACAAGGATCAACAATTATGCAAATAAGGGAAAGATTTAACACAGGAGATGAACAAAGAACTTCATCCCTCACAAAGGTAAACAATCCTAAACAACTTGGCAAAGATACCGTTGGCTGCAAGAAAATCAGTGACATTCATAATAAGCAAAATTCAGTGGCTCCTACTACTAGTGCCGTTATGAAAGAAGAAGTTTATCCAGGTTATGGTTTTGAAGCTCAAAATGATGATCCAAAACAAACTATTGAAGCAACTTCATCCAAAATTGATTCAAAAGCAACTGAAATGAATGATAAAGTAGAAGAAAAAGACCAAATTAGGTTTGATACTATTGAAGCCAATTATAATGAGATATTAGACGAAAAAGAAGGTAATAATCAAAATTGTGAAGAAACTATATCTAGTTATGACTGGATTAGTCCTATTTCTCGGCCTAGAAGCTACTGGGAAAAACTGAGACAGGAGTGGTATAAGGAAATGCTTGACTTTGGATCTGACAATGATGAGAGGCGTAAGCTCCTTGAAAGAAAAACAGTTTCAACTGTACTTTCTAGTGACTTTCGAGTAAGGATGGATAAATTGATGAACTCACACATGGGAACACAAACACAACTAGTTAATAATGGATGCAACGAAGAAGACGAAGAAGGGGGTATGGAACAATTAATGGAATTTTTTCATGATCGTTTACGTGTAAGGGGCAATCCTAAAGAGAAGGAAACAGAACACGAAGATGAAAGCATTAATGGTGGTTCAGATCACGAACTTGGTGATTATCAATCTTCACCATCAGTACATACACCATCCTCAACAACATGGAGTTATAGAGACAGTGGTGGTGGGGATGATTCTGTTCATAGAGTTGCATTTGTATCCTCACCATTGCATTCTCAATCTCAATCTTTCTATCAAGATAGTAGGCAATACTCTTCACCATCAAATCACCATTCAATTGAAATGCAATTCATATATGATTTGCGAGGCCAAATGGAACAACTTTCTATTGAGATGTCTGAGCTAAGGAAAACAATCAAAAACTGCACAGACATGCAGATGCAATTACAACAATCCAAAAAACAAGAGGTTCACACAGTTAAAGAAAAGAAAATCAATAACAAAACATCAAAGAAAGTCAATTGCTGCATTTGCAAGGAGAATAAAGTAAACTCGATTTTATACAGATGTGGACACATGTGTGCATGTCTTGAATGTGCCAATGAGTTGCAACTAAAAAGCAAAAAGTGTCCAATATGCCAAACTCCAATAATAGACGTTGTCCGAGTATATACTGACACAGAATATTTACATGATGGACAAACTCTAGCTGTGGAGGATTACGTCCTTTGA 2526 0.3725 MASSKFEIASSSPFGCVLTLKNHNDCDACITHPKNKVRDHVNTCNAVLISSDSTPNQNNKKPTWVSRVAKNNNSESLNFTRRFHNIFGDKYDSSLSALVSPRHSKTIDRWAARQAREVTKNMENNEGVVHDVLQIFPSRSSSFNSRRDREVSVSPPRSDSSFESEKTSNLGASSLVQIWEKRLNQSNCTNQNETSVGRTNSDASSNEMNAFYVEEHNKVLEEGESCDEPFSDWEYDKTGQSSGQPCSPKLHCNSDAAESERSRVADIIKKLSVTNQMQGDDNDHEVSNINVTSSPYRERDRAFTPKQLVEEKGFCQVTSSPRIRGRQAFNDLIMQFESDRRGELNNLVERGAVSKFTQRGRIQSLLRLRLLQRGVAAFDPSHPKSTTFEGNKQLQGSTIMQIRERFNTGDEQRTSSLTKVNNPKQLGKDTVGCKKISDIHNKQNSVAPTTSAVMKEEVYPGYGFEAQNDDPKQTIEATSSKIDSKATEMNDKVEEKDQIRFDTIEANYNEILDEKEGNNQNCEETISSYDWISPISRPRSYWEKLRQEWYKEMLDFGSDNDERRKLLERKTVSTVLSSDFRVRMDKLMNSHMGTQTQLVNNGCNEEDEEGGMEQLMEFFHDRLRVRGNPKEKETEHEDESINGGSDHELGDYQSSPSVHTPSSTTWSYRDSGGGDDSVHRVAFVSSPLHSQSQSFYQDSRQYSSPSNHHSIEMQFIYDLRGQMEQLSIEMSELRKTIKNCTDMQMQLQQSKKQEVHTVKEKKINNKTSKKVNCCICKENKVNSILYRCGHMCACLECANELQLKSKKCPICQTPIIDVVRVYTDTEYLHDGQTLAVEDYVL 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01219 841 Coils Coil 716 743 - -
Car06g01219 841 ProSiteProfiles Zinc finger RING-type profile. 773 812 IPR001841 -
Car06g01219 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 831 IPR013083 -
Car06g01219 841 MobiDBLite consensus disorder prediction 144 168 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 236 258 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 407 425 - -
Car06g01219 841 CDD mRING-HC-C3HC5_NEU1 772 811 - -
Car06g01219 841 Pfam Zinc finger, C3HC4 type (RING finger) 771 817 - -
Car06g01219 841 PANTHER BNAC05G24000D PROTEIN 1 824 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 407 428 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 628 672 - -
Car06g01219 841 PANTHER BNAC05G24000D PROTEIN 1 824 - -
Car06g01219 841 SUPERFAMILY RING/U-box 757 819 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 628 645 - -
Car06g01219 841 MobiDBLite consensus disorder prediction 647 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01219 Car-Chr6 12029496 12033331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01219 773 821 C3H Transcription Factor Family AT3G06140 40.816 7.49e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01219 - - cam:101500244 1660.97