Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01180 ATGATGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGGTGCAGCCAAGTAGTTTCCAATAATACATCCTTCCAAGAAACACCTCATGATCTTACAAGAAACAGAAATACCACAGAAGCGGATCTACGTTCGATTACCCTTGACTTGACACTGAATTTCAGTTCCAATGATAGCGAATTGAAGGGTTCAAGTGATGCTAGCAGTGAAGTAGGAGCTTCTGAAACTGCTAATCCTTCTGCACCGGTTACTCCTCGGGTTTTCTCTTGTAATTACTGCAGGAGAAAGTTCTTTAGCTCACAAGCATTAGGTGGTCATCAGAATGCTCACAAAAGGGAAAGAACAATGGCGAAACGTGCAATGAGAATGGGAATGTTCACTGAAAGGTATACAAGTTTGGCATCTCTGCCTCTTCACGGTTCACCTTTTCGGTCACTTGGTGTTGAAGCTCATTCTGCAATGCATCAAAGAAGGCATATGCTATCACCATCATCAATGAGGACTCCTGATATGAGAGCTGCAGCGAAATTCGATAAAAATCATTTTGGATCATTAGTTTTCATGGAAGATGATGATGTTGGTTGCTTTTGGCCTGGAAGTTTCAGACAAGTGGAACAAGGAGCTTGTGTTAATATGGAACATCCTCAAACTACAAATTCTAGTTTTGTTCCAATTGTGCCTTCTCCTCTTCCTCCACCACAAGCATCTACATCTCCTGATCTCACATTGAAGCTATAA 744 0.414 MMTPNLNLEPENHSEGCSQVVSNNTSFQETPHDLTRNRNTTEADLRSITLDLTLNFSSNDSELKGSSDASSEVGASETANPSAPVTPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGVEAHSAMHQRRHMLSPSSMRTPDMRAAAKFDKNHFGSLVFMEDDDVGCFWPGSFRQVEQGACVNMEHPQTTNSSFVPIVPSPLPPPQASTSPDLTLKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01180 247 PANTHER ZINC FINGER PROTEIN JAGGED 6 247 IPR045320 GO:0003700
Car06g01180 247 Gene3D Classic Zinc Finger 73 137 - -
Car06g01180 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Car06g01180 247 SUPERFAMILY beta-beta-alpha zinc fingers 87 118 IPR036236 -
Car06g01180 247 MobiDBLite consensus disorder prediction 59 84 - -
Car06g01180 247 MobiDBLite consensus disorder prediction 222 247 - -
Car06g01180 247 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Car06g01180 247 PANTHER ZINC FINGER PROTEIN 3-RELATED 6 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01180 Car-Chr6 11629189 11629932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01180 85 247 C2H2 Transcription Factor Family AT1G66140 44.503 6.70e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g01180 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01180 - - gmx:100775305 349.747