Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01179 ATGGCTTTGCCTATAGATAATAATAATCACGTTCACATGATCTCCTTCTTCTCCTCCTTGTTCTTATTATTCTTGACTAGTTTTCCAACAACAATTTGTCAAGAACAACAACATAACAAACATGAAGAGTGTACAAAACCATACACATGTGGAGAAATATCCAACATATACTATCCATTTTGGGGACAAAACAGACCAAGTTATTGTGGCAGCAACAACCAATTCAAACTCAAATGTGATTCTCATCATCAAAACACAACCATTCAAATTGGTTCACAAAATTTCCACGTGTTGCGTGTTGATCAAATTGATGACATCATCACAATGGTTCGAAAAGGCCTTGTTTATGATAATTGTTCTTCTAGTTTAACAAACAATTCTTTGAACTCGAATCTCTTTCATTACATGTCAAACGTAAGGAACATCACCATCTTATATAATTGTCCTAATGACTTCAAGCTTCCAAATGGCACAGACACGAACATAAACTCGTTTTTGTGCAAGGAAGATGGGACGAAGCGTGGTTTCTATGTGGATTCTGCAGCTGCAGAGGGTCTAGAATGTGAAGGAAATAATAGAATTGAAGTTCAAGTAACACAGGAAGTAAAAATTGGTGGTGGAATTGAAGGACTGAACAAGGCTTTGAGTGGTGGATTTGATGTGAAATATGTTTCGGATTCTCAAGCATGCTTAAGATGTTTTTTAAGTAATGGAACTTGTGGTGGCAATGATAAGTCTCAGTTTTCTTGCTATTGCCCTGATGGAACTGAAAGTTTTGATTGTTCTCATCTCCATAATAATCGATGGAATTGGAAAAGGAAGGTTGGTGTAGGAGTTGGTGCTGCTGTGTTCAGTGTAGTTGCAGCAGGCATTGCCATTTACATATATTATTATTGCAGAAAGAAGAAAAAGAATGTTAATTCAGTATCACCTGCGCTATCTCATAGCGTCTCTGGTTGTTCTGGTTCAGAAGACTCTGAGAAGGGAAATAGATACCGTGGACTACACTTCTTTACTTATAGGGAACTTGAAGAGGCTACAAACTACTTTGATTCTGCAAGAGCACTAGGATATGGAGGCTTTGGGACAGTGTACTTTGGAAAACTTCGGGACGGGCGATTGATTGCAGTGAAACGCATGTATGAGAACAACTACAGAAGAGTTGAGCAATTTGTGAATGAAGTTGAGATTTTAACTGGCTTACACCATCAAAATCTTGTGTCATTATATGGATGCACTTCGCGCCACAGCCGCGGACTTCTTCTTGTATATGAATATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTCCACAAGCAAAACCTGGCATGCTACCTTGGAATACAAGAAtgaacattgccatagaaactgctagtgcattggtatatcttcatgctactgacatcatccatagagatgtgaaaacccacaacattctccttgacaatcattttagtgtcaaagtagccgattttggACTTTCACGTCTATTTCCAAACCATGTCACACACATTTCAACAGCTCCACAAGGGACTCCAGGTTATGTTGATCCAGAATACCATTTGTACTATCAGCTTACCGATAAAAGCGATGTTTTTAGCTTTGGAGTTGTGCTAATTGAGCTGTTATCATCCATGCCTGCTGTTGATATCTCAAGACATAGGCAAGAGATCAATTTGTATTACATGGCTGTTAAGAAGATTCAAAATGGGACATTGCATGAGCTTGTGGACCCTACACTTGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATGAATGCAGTGGCAGAGTTAGCATTTCAGTGCTTGCAGAGTTCTAAAGATGTGAGACCTTCTATGGTTGAAGTTTTTGAAAGGCTTAAAGATATTCATAGTGATGGGATATATAAATGTAAACCTCAGGTGTTAGATATCTCAGGAGATGCTGCTGCTGCTGCTTTGATTAAGAATAAACCACCACCACCTTCACTTGACTCAAATTTGGTAGAATCCGGCTCCTCTAcagtcggaatatag 2022 0.361 MALPIDNNNHVHMISFFSSLFLLFLTSFPTTICQEQQHNKHEECTKPYTCGEISNIYYPFWGQNRPSYCGSNNQFKLKCDSHHQNTTIQIGSQNFHVLRVDQIDDIITMVRKGLVYDNCSSSLTNNSLNSNLFHYMSNVRNITILYNCPNDFKLPNGTDTNINSFLCKEDGTKRGFYVDSAAAEGLECEGNNRIEVQVTQEVKIGGGIEGLNKALSGGFDVKYVSDSQACLRCFLSNGTCGGNDKSQFSCYCPDGTESFDCSHLHNNRWNWKRKVGVGVGAAVFSVVAAGIAIYIYYYCRKKKKNVNSVSPALSHSVSGCSGSEDSEKGNRYRGLHFFTYRELEEATNYFDSARALGYGGFGTVYFGKLRDGRLIAVKRMYENNYRRVEQFVNEVEILTGLHHQNLVSLYGCTSRHSRGLLLVYEYVPNGTVADHLHGPQAKPGMLPWNTRMNIAIETASALVYLHATDIIHRDVKTHNILLDNHFSVKVADFGLSRLFPNHVTHISTAPQGTPGYVDPEYHLYYQLTDKSDVFSFGVVLIELLSSMPAVDISRHRQEINLYYMAVKKIQNGTLHELVDPTLGFESDFKVRKMMNAVAELAFQCLQSSKDVRPSMVEVFERLKDIHSDGIYKCKPQVLDISGDAAAAALIKNKPPPPSLDSNLVESGSSTVGI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01179 673 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 663 IPR044652 -
Car06g01179 673 Gene3D Transferase(Phosphotransferase) domain 1 427 632 - -
Car06g01179 673 ProSiteProfiles Protein kinase domain profile. 350 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01179 673 SMART serkin_6 350 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01179 673 ProSitePatterns Protein kinases ATP-binding region signature. 356 378 IPR017441 GO:0005524
Car06g01179 673 SUPERFAMILY Protein kinase-like (PK-like) 332 636 IPR011009 -
Car06g01179 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Car06g01179 673 Pfam Wall-associated receptor kinase galacturonan-binding 44 110 IPR025287 GO:0030247
Car06g01179 673 Gene3D Phosphorylase Kinase; domain 1 321 426 - -
Car06g01179 673 Pfam Wall-associated receptor kinase C-terminal 186 255 IPR032872 -
Car06g01179 673 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 19 663 - -
Car06g01179 673 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01179 Car-Chr6 11608268 11611941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01179 35 658 Receptor kinase-like Gene Family AT1G25390 41.835 2.48e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Car06g01179 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01179 - - gmx:100794703 845.499