Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01167 ATGTCAGAGGTTTGGCTTTGTCTGAAGAAATCACTTCATTGCAAACCTCATTCATCAGAGGTTCATGATCCAAAGGCAAATAAGCACCATAAAAGAAAAAACAACAAAGACAAGAATGATTTTTCAAATGTCAAAGATTGTACAAAATCACAAGCCAACAGTGTCATGCTTAACCGTGTTTGTGTTACTCATGAAATTGTTATTGATAGCAAAAGTGGTGAGATTAAAATTTGTCCATGTTATCCTTGTTCTCAAAGCACTGAAGATGGAAAAGGTGTTGAAGGTTCTTCTGATAGATCCATGCCTTCAACAAAAACATATTGTGTTGATTGTGAATGTGGTATTTTCTCAAAGCCAAAGGTGAAAGTGGTGAAAGATTCTAGTAATGGTAATTTTCCAACAATAACTTGTCCTCATGAATTTGGTGAGAAAAGTAATTCTCTTGACACTATTGAAGAAGAACATGATATCTCTGAGCATTCAGTGATCAAACTTCAAAGACAAGAATCATCATGGCAAATCATAAAAAAAATATGTGAAGCTAGCAATGTGAATGGTGAAAGCAAGGCAATAGAAATTGAATGTGTCTTGAAAGTCCAAAACACACAAGAGACATTTGCCTGCTTTGAGGACTGTAGAGAAATGATAAAGATTAAAGTTGAAAAGCTACAAATTAATCACCCTAGATGCTTAGTTGATGGAAATGAAATGTTAAGGTTTCATGGTACAACAATTGCATGCTCTCTTGGTGTAAATTACTTTTCTACACTATGCATTTTAGACCATTGCGGTCTATGCCAAATTTTAAGGCATGGTTTCACTGCCAATGAAGGATTCCATGATAATATTGGTGTTTTCACAACTTCTACGTGTGAAAGAGCTATTGATTCCTTTAGCTTTACCAATAAACCACCATATGTGAAAAAATGTGTTATGGTGTGTAGGGTGATAGCTGGGAGAATAAATAATCCTTTGCAAGAGATTCAAGAAATGAATGATTCAAGGTATGATTCTTTGGTTAAAAAGATAAGTTGTCAATCAGATATTGAAGAGCTGATTGTTTTGAATCCTAGAGCTGTTCTCCCCTGCTTTGTTTGTATAGCTTTCTCAGTTCCAACCACCACATGTACCGTTTTGCTTTCTCCATTGCCTCCAAAGCTCGGATTGCTAGGAGCTATGCTTGAAAATGTTTTAAGATTAATTGGAAGTAGGGTGGGATGGAGCAGAAATTATGCGGAAAAAGAGATAAAATTTGGTGTGGACGCTCGAGCTTTGATGCTTAAGGGTGTTGAAGAGCTTGCTGAGGCAGTTAAAGTAACCATGGGCCCTAAGGGGCGTAATGTAGTGATTGAGCAAAGTTTTGGTGCTCCTAAAGTGACAAAAGATGGAGTTGCAAATGCTACCAATGATGTGGCTGGTGATGGAACCACTTATGCTACAATTCTTACCCGAGCAATATTTACAGAAGGGTGCAAATCAGTTGCAGCTGGAATGAATGCAATAGACCTGAGGCGAGGTATAAATATGGCTATTGATGCTGTTGTGACAAACTTGAAAAGTAGAGCACGGATGATTAGCACTTCTGAAGAAATTGCCCAGGTCGGGACAATATCTGCTAATGGAGAGAGAGAAATTGGTGAGTTAATTGCAAAAGCTATGGAGAAAGTTGGCAAAGAAGATGTAATCACAATTGCAGATGGGAAGACATTGAACAACGAGTTGGAAGTTGTTGAAGGAATGAAGCTTGACCGAGTCCCTAGCTCTCGAGCTGCTATTGCTGGAGCATCGTGTGGAATCTCATGTTTGGCATTCTTTGGCCATTGTGCTGTGTTGTGCTCTTTGGAACTTGAGGATCCCCTCATTATAATCCATGAGAAGAAAATCTCAAGTATAAATGCTATTGTTAAAGTATTAGAGTTAGCTTTGAAGAGACAAAGACCTTTATTGATTGTTGCTGAGGATGTTGAAAGCGATGCCCTTGCAACTCTTATTCTAAACAAGCTTCGGGCTGGAATCAAGGTATGTACAATCAAATCTCCTGGTTTTGGTGAAAACCGGAAATCTGGTCTCCAGGATCTCGCTGTTCTTACGGGAGGTCAACTTATCACTGAAGAGCTCGGCATGAATCTTGAAAAAGTTGATCTTGATATGTTTGGCTCTTGCAAAAAGATTACAATTTCCAAAGATGATACTGTAATTCTTGATGGAGCTGGTGATAAGAAATCAATTGAGGAAAGATTTGAGCAGATTAGGTCGGCAATCCAAAATAGCACTTCAGATTATGACAAGGAAAAATTACAGGAAAGATTAGCCAAGCTTTCTGGGGGTGTTGTGGTGCTTAAGATTGGAGGAGCCAGTGAGGCTGAAGTTGGTGAGAAAAAGGATAGAGTGACAGATGCCTTAATTGCAACTAAGGCAGCTGTAGAGGAGGGCATAGTACCTGGTGGTGGTGTTGCTCTTCTTTATGCATCAAATGAGTTAAGTAAGCTTCAAACTGCCAACTTCGATCAGAAGATAGGCGTCCAAATTATCCAAAATGCTTTAAAGACACCGGTGTACACAATTGCATCAAATGCTGGAGTTGAGGGTGCTGTTGTTGTTGGTAAATTATTGGAACAGGATAATCCTGATCAGGGGTACGATGCCGCCAAAGGTGAATATGTCGATATGGTTAAATCTGGAATAATTGATCCATTGAAGGTGATAAGGACCGCCTTGGTTGACGCAGCCAGTGTGTCATCTTTGATGACAACAACTGAAGCTATTGTGTATGAACTCCCAAAAGAAGATAATAGTGGTCCTGCTATGCCTGGGTGTATGGGTGGTATGGACTATTAG 2838 0.3918 MSEVWLCLKKSLHCKPHSSEVHDPKANKHHKRKNNKDKNDFSNVKDCTKSQANSVMLNRVCVTHEIVIDSKSGEIKICPCYPCSQSTEDGKGVEGSSDRSMPSTKTYCVDCECGIFSKPKVKVVKDSSNGNFPTITCPHEFGEKSNSLDTIEEEHDISEHSVIKLQRQESSWQIIKKICEASNVNGESKAIEIECVLKVQNTQETFACFEDCREMIKIKVEKLQINHPRCLVDGNEMLRFHGTTIACSLGVNYFSTLCILDHCGLCQILRHGFTANEGFHDNIGVFTTSTCERAIDSFSFTNKPPYVKKCVMVCRVIAGRINNPLQEIQEMNDSRYDSLVKKISCQSDIEELIVLNPRAVLPCFVCIAFSVPTTTCTVLLSPLPPKLGLLGAMLENVLRLIGSRVGWSRNYAEKEIKFGVDARALMLKGVEELAEAVKVTMGPKGRNVVIEQSFGAPKVTKDGVANATNDVAGDGTTYATILTRAIFTEGCKSVAAGMNAIDLRRGINMAIDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEDVITIADGKTLNNELEVVEGMKLDRVPSSRAAIAGASCGISCLAFFGHCAVLCSLELEDPLIIIHEKKISSINAIVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKVCTIKSPGFGENRKSGLQDLAVLTGGQLITEELGMNLEKVDLDMFGSCKKITISKDDTVILDGAGDKKSIEERFEQIRSAIQNSTSDYDKEKLQERLAKLSGGVVVLKIGGASEAEVGEKKDRVTDALIATKAAVEEGIVPGGGVALLYASNELSKLQTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPDQGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVYELPKEDNSGPAMPGCMGGMDY 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01167 945 SUPERFAMILY GroEL equatorial domain-like 416 923 IPR027413 -
Car06g01167 945 Gene3D - 465 923 IPR027413 -
Car06g01167 945 SUPERFAMILY GroEL-intermediate domain like 525 587 IPR027410 -
Car06g01167 945 PRINTS 60kDa chaperonin signature 799 820 IPR001844 GO:0042026|GO:0140662
Car06g01167 945 PRINTS 60kDa chaperonin signature 751 776 IPR001844 GO:0042026|GO:0140662
Car06g01167 945 PRINTS 60kDa chaperonin signature 669 692 IPR001844 GO:0042026|GO:0140662
Car06g01167 945 PRINTS 60kDa chaperonin signature 437 463 IPR001844 GO:0042026|GO:0140662
Car06g01167 945 Gene3D - 416 464 IPR027413 -
Car06g01167 945 SUPERFAMILY GroEL apical domain-like 572 777 IPR027409 -
Car06g01167 945 Gene3D - 524 811 IPR027410 -
Car06g01167 945 Pfam TCP-1/cpn60 chaperonin family 433 924 IPR002423 GO:0005524
Car06g01167 945 MobiDBLite consensus disorder prediction 16 43 - -
Car06g01167 945 CDD GroEL 414 925 IPR001844 GO:0042026|GO:0140662
Car06g01167 945 Gene3D GroEL 579 774 IPR027409 -
Car06g01167 945 SUPERFAMILY ADP-ribosylation 163 374 - -
Car06g01167 945 Gene3D - 152 370 - -
Car06g01167 945 ProSitePatterns Chaperonins cpn60 signature. 806 817 IPR018370 GO:0005524|GO:0006457
Car06g01167 945 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 394 466 - -
Car06g01167 945 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 464 938 - -
Car06g01167 945 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 394 466 - -
Car06g01167 945 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 464 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01167 Car-Chr6 11479047 11487928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01167 130 367 C2H2 Transcription Factor Family AT5G54630 43.902 5.49e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01167 K04077 - gmx:100820546 879.011