Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01148 ATGGGGGAAGAAAAGCAACACAGTATTCCCGCTTTGCCATGGATGCGAGACCCCGTCGACGTCACTCTCTCTCAACAACTTCCCCTCCATTCCGTCCCTTCTCTCCACCCTAAGTTGAAATTAGCCTTAGAGGAAATGGGAATCACGAACCTATTCCCAGTGCAAGTCGCAGTTTGGCATGAAACCGTTGGTCCCGGTAACTTCGACCGTGACATTTGCGTTAACTCACCAACTGGAAGCGGCAAAACCCTCGCCTACGCTCTCCCCTTAGTTCAGATGCTATCAAGCCACGTCACCAAATGTATACGCGCATTGGTTGTGGTCCCCACTCGTGACCTTGCTTTGCAGGTAAAAAAAGTCTTCGACGCCGTTGCTTCTCCGTTAGGCCTTCGCGTTGGTTTGGCCGTTGGTCAATCTTCTGTAGCCGATGAAATTTCGGAGCTCGTTGAAATGCCTGCACGTGAGATTGGCACGTGTTATGATCCGCAATGTGTTTCGCTTCCTCGGTTTCAGAGTAAGGTTGATATATTGGTAGCTACTCCTGGTAGGCTTATGGATCACATTAATACTACTATAGGATTCACGCTTGAACATCTTTATTATCTTGTGGTTGATGAAACAGATAGACTGCTTCGTGAGGCATACCAGTCATGGTTGCCTACTGTGCTCGAACTGACCCAATCCAAGGATGACGGTTTTTTCCAATCGGCTGATTCATTTTTCCCCTGTTCTGTTGGTGCATTAAGAACAAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGACAAGCCTTATCCCAGGCTAGCAAAGATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGGCTTATTCAGCTGAATTTACATCACCCTTTATTATTGAAAGCTGGACAAATGCGATATCGGCTCCCCGAAAATTTAGAATCTTATAAACTGATTTGTGAAACAAAGGTCAAACCTTTGTATTTAATTGCCCTTCTGAAATCCCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTAGTCTTCAACATCAACGTGTTCGAAGCAAGACATTGAATGAATTTCGGAAGGGAAAGTTTCAAGTGCTTGTATCTTCTGATGCGTTGACACGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTGCCCAAATACATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCGAGAGCGGGACATACTGGGCGTTGCTTCACATTGATGTCTGAAGATGAGGTTGGACGATTTAAGAAGTTGATGCGAAAGGCTGAGGGTGGTTCTTGTCCTGAGCATTTTGTTCCATCCAGTTTAATTGAGGCACTCAATACTACCTACCAATCAGCACTGACAAAATATAAGGAGATAATTTCAAAGACACAAAAGAAACCCAAGGATTAG 1494 0.4418 MGEEKQHSIPALPWMRDPVDVTLSQQLPLHSVPSLHPKLKLALEEMGITNLFPVQVAVWHETVGPGNFDRDICVNSPTGSGKTLAYALPLVQMLSSHVTKCIRALVVVPTRDLALQVKKVFDAVASPLGLRVGLAVGQSSVADEISELVEMPAREIGTCYDPQCVSLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSKDDGFFQSADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGQMRYRLPENLESYKLICETKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCKLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGKFQVLVSSDALTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGHTGRCFTLMSEDEVGRFKKLMRKAEGGSCPEHFVPSSLIEALNTTYQSALTKYKEIISKTQKKPKD 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01148 497 CDD SF2_C_DEAD 308 439 - -
Car06g01148 497 SMART ultradead3 47 311 IPR014001 -
Car06g01148 497 Gene3D - 20 298 IPR027417 -
Car06g01148 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Car06g01148 497 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 476 - -
Car06g01148 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 488 IPR001650 -
Car06g01148 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Car06g01148 497 CDD DEADc_DDX51 39 295 - -
Car06g01148 497 Gene3D - 306 497 IPR027417 -
Car06g01148 497 PANTHER RNA HELICASE 28 476 - -
Car06g01148 497 SMART helicmild6 347 431 IPR001650 -
Car06g01148 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Car06g01148 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01148 Car-Chr6 11205800 11211827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01148 71 444 Eukaryotic Initiation Factors Gene Family AT1G72730 26.190 1.16e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01148 K14807 - vvi:100258315 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01148 06 11205800 11211827 Car06g01148 06 11205800 11211827 ECH