Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01142 ATGAAATTCTCTTCAGCTGGTTTTAGTCCTCCACCTCCTGAAGGGGAGAAACGGGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCAGCTGTTGGAAGCCGTGTGGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTACATCCCCAATCCAAGCTTACCTCCCCAACTTATTTGCCAACTTCATAATTTGACTATGCATGCAGATACTGAGACAGATGAAGTGTATGCACAAATGACCTTGCAACCTCTAAATCCTGAAGAGCAAAAAGAAGCATATCTTCCTGCGGAGTTGGGAGCTGCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTTTGACAGCCAGTGATACAAGCACTCACGGTGGATTCTCTGTTCCTCGCCGTGCAGCAGAAAAAGTTTTTCCTCCATTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGAGATTTGCATGGTATTGACTGGAAATTCAAACATATCTTCCGCGGTCAGCCCAAAAGGCATTTGCTTACTACAGGGTGGAGTGTCTTTGTGAGTGCCAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAAATGCTTCTTGGTATTCGGCGTGCTAATCGACCACAACCTATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGCTACTTGCTGCGGCAGCTCATGCAGCTGCAACAAACAGTCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCATCAGAATTTGTTATACCCCTGGCAAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGTTACATGGGAACGATAACTGGCATCAGCGATCTGGATTCTGTCCGTTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCTGGTGAAAGGCAACCTAGAGTTTCTCTATGGGAAATTGAGCCACTCACAACATTTCCAATGTATCCGTCGCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTTCCTTCATTCCACGGCTTGAAGGACGATGATTTTGGCATGAACTCTCCACTATTGTGGCTTCGAGATACAGATAGAGGGCTTCAAACTCTTAATTTTCAAGGGATCGGTGTTAATCCTTGGATGCAGCCGAGGCTTGATCCTTCCATGATGCATTTGCAACCAGATATGTACCAAGCTATGGCAGCGGCTGCGCTTCAGGATATGAGGACTTTCGACCCTTCTAAACAGCAGCATCCTGGTTCCTTACTTCAATTTCAGCAGCCGCAGAATTTCACCAATGGTACCGCTACTTTAATGCAGAACCAGATGTTGCAGCAATCTCAACCTCAGCAAGCTTTTCCAAAGAATCAAGAAAATCAGCATCCATCCCAATCTCAATCTCAGCCTCAAACTCAATCACATTTCCAGCAGCTTCTTCAGCATCAGCACTCATTCACTAATCAAAATCATCATCATCTAcagcagcagcaacagcagcagcagcagcagcagcagcaacaacaacaacaaaaatcacaacagcagcaacaaGTTGTAGATCATCAGCAAATTTCAAGTGCCGTCTCAACAATGTCTCAGTTTGTCTCGACACCTCAATCTCAACCGACACAGCCCATGCAAGCTATCTCTTCAATTGGTAATCAGCAAAATTTCACTGATTCAAATGGGAATCATGTAACTACTTCTATTGTTTCACCTTTGCACAATATGTTGGGTTCATTTCCCAACGACGAAACATCTCACCTCCTCAACCTTCCTAGACAAAACTCTTGGGTTCCGGTTCAATCATCAACTGCATGGCCCTCCAAGCGTGTCGCAGTGGATCCTCTCCTTTCTTCTGGAGGAACTAATTATGTTTTGCCTCAAGTGGAGCAGCTAGGGCAGTCACAGACTACCATGTCTCAAAATGCTGTTATCCTGCCACCGTTTCCCGGCAGGGAGTGTGCTATAGAAGGGAGCACCGATCCACAAAACCATCTTTTGTTTGGTTTTAACATAGAGCCCTCATCGCATCTAGTGTATAATGAGATGCCGAACCTTAAGAGGGTCAACAGCAACTGTGACTCATCAACTGCGCCTTTCCAATCTTCTACTTACCTGAATACTGCAGGCGCTGATTCTTCATTGAATCCTGGAATGACACACGGCATTGGTGAGTCGGATTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGAAACCAACCAAACAGAACCTTTGTGAAGGTTTACAAGTCTGGGTCCTTTGGTAGATCGTTGGATATCACTAAATTCTCCAACTACCATGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGGCTTGAACGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAAGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGAAACAATGGTCTAGAGCTTCTGAACTCAGCTCAGAATCAAAGGCACTCTAATGGCATCTGTGATGATTACACCGGCCGTGAGGACTCGAGAAATTTAAGCACCGGGTTAGCAACTGTGGGGTCTTTAGACTACTGA 2754 0.4412 MKFSSAGFSPPPPEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYLPAELGAASKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGIDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQMLLGIRRANRPQPMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGLKDDDFGMNSPLLWLRDTDRGLQTLNFQGIGVNPWMQPRLDPSMMHLQPDMYQAMAAAALQDMRTFDPSKQQHPGSLLQFQQPQNFTNGTATLMQNQMLQQSQPQQAFPKNQENQHPSQSQSQPQTQSHFQQLLQHQHSFTNQNHHHLQQQQQQQQQQQQQQQQQKSQQQQQVVDHQQISSAVSTMSQFVSTPQSQPTQPMQAISSIGNQQNFTDSNGNHVTTSIVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRVAVDPLLSSGGTNYVLPQVEQLGQSQTTMSQNAVILPPFPGRECAIEGSTDPQNHLLFGFNIEPSSHLVYNEMPNLKRVNSNCDSSTAPFQSSTYLNTAGADSSLNPGMTHGIGESDFLQTPENGGQGNQPNRTFVKVYKSGSFGRSLDITKFSNYHELRSELARMFGLERELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAQNQRHSNGICDDYTGREDSRNLSTGLATVGSLDY 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01142 917 MobiDBLite consensus disorder prediction 752 783 - -
Car06g01142 917 CDD B3_DNA 125 226 IPR003340 GO:0003677
Car06g01142 917 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Car06g01142 917 Pfam AUX/IAA family 779 869 IPR033389 -
Car06g01142 917 Gene3D - 779 873 - -
Car06g01142 917 PANTHER AUXIN RESPONSE FACTOR 1 897 - -
Car06g01142 917 SUPERFAMILY CAD & PB1 domains 780 859 - -
Car06g01142 917 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Car06g01142 917 MobiDBLite consensus disorder prediction 484 562 - -
Car06g01142 917 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car06g01142 917 Coils Coil 530 557 - -
Car06g01142 917 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Car06g01142 917 Gene3D - 290 362 - -
Car06g01142 917 ProSiteProfiles PB1 domain profile. 784 868 IPR000270 GO:0005515
Car06g01142 917 SMART B3_2 126 228 IPR003340 GO:0003677
Car06g01142 917 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 897 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car06g01142 917 Gene3D - 124 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01142 Car-Chr6 11135648 11142391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01142 1 483 B3 DNA Binding Superfamily AT1G30330 83.845 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car06g01142 AUX_IAA 8.1e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01142 - - gmx:100777789 1485.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01142 06 11135648 11142391 Car06g01142 06 11135648 11142391 ECH