Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01139 ATGGGGCGTCGCAAAATTGAGATTGAGATGGTGAAAGATCCCAACACAAGACAAGTTACATTCTCAAAACGGCGAACGGGCTTATTCAAAAAAGCTAACGAATTATCGATTCTGTGTGGAGCAGAAGTTGCTATTGTTGTTTTCTCTCCGGGTAACAAACCTTACTCTTTTGGTCACCCTGGAGTTGACGTTGTTGCTGCCAAATTTCTTCAACAAGATTCTAAACCAATTGATTCCCATGGAAATCCCTCTTCTGATTCTTCCAATATGGAAAAATTGAATCTAGAACTTGCTGAGGTTTTGGCTCAAATTCGTGAAGGTGAAAAACACAGTGAGGCTCAAGACCAGATCTTGAAACAACACAACATTTCAAAACTTCAATTACAAGATTTGAGAGATTCTTATCAAATACTTCAAGATCGGATTAAATTACGTCTTAGTGATATCGAGATTTCTGAATACATGATGCTTCTTTCTCAGGATCCCGTTGTTGGAATTAAAACAAAATCTCTCAAAAAGAAAAGAAGAAGAAATTGA 537 0.3724 MGRRKIEIEMVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKFLQQDSKPIDSHGNPSSDSSNMEKLNLELAEVLAQIREGEKHSEAQDQILKQHNISKLQLQDLRDSYQILQDRIKLRLSDIEISEYMMLLSQDPVVGIKTKSLKKKRRRN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01139 178 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 169 - -
Car06g01139 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 CDD MADS 2 60 - -
Car06g01139 178 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Car06g01139 178 Coils Coil 90 110 - -
Car06g01139 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car06g01139 178 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Car06g01139 178 PANTHER MADS BOX PROTEIN 2 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01139 Car-Chr6 11097352 11098001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01139 1 160 Type I MADS-box Gene Family AT2G34440 46.512 2.06e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car06g01139 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01139 - - mtr:MTR_4g131030 245.743