Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01135 ATGAATCCACCACTCTCTTCTTATCCTCTTCAACCAAATAATGCTTCATCATTTTCATACACTTCATTAGAGAAAAAGAGTTCATCAATGACAGCAATGAGAGAAATGATATTCCGAATGGCGGTTATGCAACCTATTCACATAGACCCAGAAACCATTAAACCACCAAAGAGAAAAAACGTGAAGATTTCAAAAGATCCACATAGTGTAGCTGCAAGACACAGAAGAGAAAGAATAAGTGAGAAAATAAGGATCTTGCAGAGATTAGTTCTTGGTGGAACAAAAATGGATACAACTTCTATGTTAGATGAAGCAATACATTATGTGAAGTTCTTGAAGAAACAAGTGCAGATACATCCTTTAGCAAATGCCAAATCTGCTTTAAAAGACCCACGAAGAAGTAATTTTGCTTTTGCAGCTGTTGCCATTGCCACCTGCAACCAAAGTAAAAGGAGATGTTGCTTGTTGGGTTACATGAGAAACTTAAATAGTTAA 495 0.3616 MNPPLSSYPLQPNNASSFSYTSLEKKSSSMTAMREMIFRMAVMQPIHIDPETIKPPKRKNVKISKDPHSVAARHRRERISEKIRILQRLVLGGTKMDTTSMLDEAIHYVKFLKKQVQIHPLANAKSALKDPRRSNFAFAAVAIATCNQSKRRCCLLGYMRNLNS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01135 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 121 IPR036638 GO:0046983
Car06g01135 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 16 132 IPR045843 GO:0003700|GO:0006355
Car06g01135 164 Gene3D - 61 134 IPR036638 GO:0046983
Car06g01135 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Car06g01135 164 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 16 132 - -
Car06g01135 164 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
Car06g01135 164 SMART finulus 69 118 IPR011598 GO:0046983
Car06g01135 164 CDD bHLH_AtIND_like 64 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01135 Car-Chr6 11039902 11040396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01135 27 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 86.813 3.95e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car06g01135 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01135 - - jre:108985771 172.555