Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01119 ATGGAGTCGAACTCAGATTCAGATTCCGACGGATCTCACGTCTCTACAACTCCTCCAAGACAGCCAAATCCACCGCCATTACCATTACCACCAAAACCACACCTTCCAATTTCCAACAAaaaatcaaaaccaaaatccaaaaccaaaaccaaaCCCTCAAAATCCAATAAAAACCCTCCCAAACCCCCCGAAACTATCCCCCAACAAGACcctttccctttcccactcccttccttccctttccatatccGACGACCGTCCGACGCCGCTTCATCTTCATCTTCCCACTCAATCGAAACCCTCCCCGCTGGATTCTTCTCCAAATCAATTTCCTTCTCCAAAATTCGAAAACCCTTACTCAATCTAGAATCTTCCGACAACGAACCTGTTCTTAATCCCCCCATAACCGCTAAATTCGCGAAGAAACACCCTAACTTGATAGGTTCCAGTGTTCCAATTCCGACGGTGAAGGTACTGAGAGGCACCGGAGAAGGTAATTTTGTGAAGTTGAATCTTAATGGTAAGAGGAAAAAGTTTTTGAACAAAGGGTGGAATAAAAATGGAAAATTTGGCAGTGGTAAAAGGTTTAGAAGAAATAGTAATAATTATAGTAGTAGAAGTAAACGCACGAAATTGGAAGATGAAGGGAATGATAATGAGGAAGATGATTTAGCTTCAGAGAATGCAAAGCAACAAGAGAAGCAAAAGGGTTGTGAAAATGACTGCAAAGTGTTGGAGGAGGCTGTGTTGGCAGCAAGAGATGAAGCTTCTGATGAGAATTTGGTGAAGTTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAGGGGCAACTCGAGGCTATTAAGATGGTTCTTGCTGGCAAATCGACTATGCTTATTTTGCCGACTGGTGCTGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTGATTTTGCCTGGGATTACACTTGTTGTTAGTCCATTGATAGCTTTGATGATTGATCAGCTTAGGCAATTGCCTCCTCTTATTAGTGGTGCTCTCCTTAGCAGTGCTCAGACGTTTGACGAATCATCTGAAACGCTCAACCAGCTTCGACAAGGCACAATAAAGGTGCTTTTTGTTTCACCGGAGCGGTTCTTGAATGAAGAGTTTCTATCTGTTATCTCTGCTGTGTCAGCCGTCTCACTCGTTGTTATTGACGAGGCGCATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAACAGTCTTAATGTAGGTTCCGTTCTTGCAATGACAGCTACTGCTACAGCCATGACTTTAGATGCCATCATGTCTGCTTTAGAAATTCCTCGCACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGTGTCTTTAGTAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTTCTCCTTTTGCGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCCGAAACTGATCTAATTAGCAGATACTTGAATGATCACAGTATCTTAGCAAAGAGTTATCATAGTGGTATTTCTGCAAAGGAACGTGGTAACGTACAAGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGTGATGTTGGAGCAGTAATTCATTACAGTTTACCCGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGATTGTCCTATTGCCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTACTGACAAAAACTCCTGTGGGAAAATCTGTTCGTTCGTCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTCACAGTTTTGACACGCTTGGAGCTGGGCGATGTGCAGTACATACATTTACTTCCACAGACAAATGCTACTTGTGTTCTGAATTTTCATAAGACTCCAGCTGTGTCCCTTGCCCAAAAGATTTCTGCTATTGCTGTAATTCTGAAAAGATCTGAAAATAAGCATGGTCAACATATTTTTGATATTCCAACTGTGGCAAATGACATGGGAATCACACCAGTTGAATTAACAAATCAGTTGTATGAACTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAGCAGACTTTTTTTCTCTATCGGCAGATATTACCCAATGGTTATCTGAAGTTGAAAGTTGTAAGGTACGAAAAATGGATGCAATGTTTAACGCTGCATATTTTGCAGTAAATTTATGTGATAAGATGAACGGTTGCAGTAGTGCGGATCACACACCATGCCTACAAAGAATGATATTGGATTACTTTGCTGGAGTTGATAATACTGATTTCTGCACGAAAATTGGTCACAGCAGTCCTTTCCTGCGAGCAGATATAAAGGTCTTTCTACAGAGCAATACACATGCTCGATTTACACCACGGGCTGTTGCGAGGGTAATGCACGGAATTGCAAGCCCAGCCTACCCTTATGCAACATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAAACTTTAAGGTGGTAATGGAAGCAGCAAAGGAAGAACTTAAAAATTTTATTGGAAAAGATATGCTCTAA 2736 0.3973 MESNSDSDSDGSHVSTTPPRQPNPPPLPLPPKPHLPISNKKSKPKSKTKTKPSKSNKNPPKPPETIPQQDPFPFPLPSFPFHIRRPSDAASSSSSHSIETLPAGFFSKSISFSKIRKPLLNLESSDNEPVLNPPITAKFAKKHPNLIGSSVPIPTVKVLRGTGEGNFVKLNLNGKRKKFLNKGWNKNGKFGSGKRFRRNSNNYSSRSKRTKLEDEGNDNEEDDLASENAKQQEKQKGCENDCKVLEEAVLAARDEASDENLVKLLKLIHGYDSFREGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLIALMIDQLRQLPPLISGALLSSAQTFDESSETLNQLRQGTIKVLFVSPERFLNEEFLSVISAVSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHNSLNVGSVLAMTATATAMTLDAIMSALEIPRTNLIQNAHLRDNLRLSVSLVKNRMKDLLVLIKSSPFAEVKSIIVYCKFQSETDLISRYLNDHSILAKSYHSGISAKERGNVQELFGSNKIRVVVATVAFGMGLDKSDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPTDKNSCGKICSFVKESASRRFDMKEEVMLTVLTRLELGDVQYIHLLPQTNATCVLNFHKTPAVSLAQKISAIAVILKRSENKHGQHIFDIPTVANDMGITPVELTNQLYELKLKGEITYEMKDMAYCYRILEVPADFFSLSADITQWLSEVESCKVRKMDAMFNAAYFAVNLCDKMNGCSSADHTPCLQRMILDYFAGVDNTDFCTKIGHSSPFLRADIKVFLQSNTHARFTPRAVARVMHGIASPAYPYATWGKTHFWGRYTKINFKVVMEAAKEELKNFIGKDML 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01119 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 630 IPR001650 -
Car06g01119 911 Pfam Helicase conserved C-terminal domain 488 583 IPR001650 -
Car06g01119 911 MobiDBLite consensus disorder prediction 56 80 - -
Car06g01119 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 598 IPR027417 -
Car06g01119 911 MobiDBLite consensus disorder prediction 1 97 - -
Car06g01119 911 Gene3D - 245 452 IPR027417 -
Car06g01119 911 SMART ultradead3 270 468 IPR014001 -
Car06g01119 911 MobiDBLite consensus disorder prediction 38 54 - -
Car06g01119 911 MobiDBLite consensus disorder prediction 183 236 - -
Car06g01119 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 452 IPR014001 -
Car06g01119 911 Gene3D - 460 648 IPR027417 -
Car06g01119 911 PANTHER DNA HELICASE RECQ FAMILY MEMBER 55 834 - -
Car06g01119 911 MobiDBLite consensus disorder prediction 1 17 - -
Car06g01119 911 MobiDBLite consensus disorder prediction 18 37 - -
Car06g01119 911 SMART helicmild6 503 584 IPR001650 -
Car06g01119 911 PANTHER ATP-DEPENDENT DNA HELICASE Q4 55 834 - -
Car06g01119 911 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 264 612 IPR004589 GO:0004386|GO:0006310
Car06g01119 911 CDD SF2_C_RecQ 460 593 - -
Car06g01119 911 CDD DEXHc_RecQ4-like 262 459 - -
Car06g01119 911 Pfam DEAD/DEAH box helicase 277 437 IPR011545 GO:0003676|GO:0005524
Car06g01119 911 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 389 398 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01119 Car-Chr6 10869728 10877152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01119 489 616 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 6.41e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01119 K10730 - gmx:100811214 1187.56