Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01113 ATGATGGATGCTGTTGAGGTTGAAGAAAATCTATTTGCTGTTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTGTAATTTATTGCCAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACTGGAATTCAAGCATTATGTTCAGTACATGTAGCCTTGGAGAAAGCCAAAAATGTTCTTCATCATTGCTCAGTATGCAGTAAACTTTACCTGGCTGTAACTGGGGATTCGGTTCTCCTAAAGTTCGAGAAGGCCAAATGTGCTCTTGAAGACAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCGGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCCTTAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAGCAGGGCAAAAAGTTTGACAACTATAGCGAATGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGTAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTGAAGAAACTTATAGAAAGAGCTCGAGCTGAGGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTTCAGACGACAATGATTCTCAGGGTTCCGCTCCTTGTTCTCCCACTGTTCAGGGATCTACGGAGGATGCTGTTCCTGTAAGTTATAATCAGGCTTTTGACAGACAGTTTTCAAAACTTAGTTCCTTTGGTTTCAAGCCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGACAAACATATGAAAGGGTTTGCATAGAGAAATGGTTCGGTGATGGGCATGACAACTGTCCAAAGACCCAGCAGAAACTTCCACATCTTTACTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGCTGGTGTGAACAAAATGGAATTTCTATTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCCACAAATTCAAGATCTGTAAATAGTGTGAGCTCTTGCAAATTAAAGGGTGTCAAAGTGGTTCCTTTAGAAGATGGTTGTATCTCAGAGGAATATGGGGAAAATGGAGCTGAAAGTGTATCTGCACAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTCAAAGTCTTGACCGAGGGGAACAATTGGAAGAGGAAATATGAAGTAGTAGAACAGTTAAGGCTGTTGCTGAGAGATGATGAGGAAGCTAGGATTTTAATGGGGGGTAATGAGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCAGCTGTCCATGAAAGGAATTTGATGGCCCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTATCTGTGAATAACGACAGAAATAAGGAGACTATGTTATCAGCTGGAGTTTTACCTTTGTTGGAGGAAATGATTACTAACACTAGTTCTTATGGTTGTGCTACTGCTCTATACGTGAATCTCTCTTGCCTTGAAGAAGCCAAACCTCTGATTGCCATGAGTCAGGCTGTACAATTCCTAATCCAGCTCCTTCAATCTGACTTTGACATTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACCGTGCCCTCCAATATTCCACACTTACTTTCATCCGGCATTGTTAATGGTCTACAATCCCTTCTTGTAGACCAGGTCGATTGTACATGGATTGAGAAATGCATAGCTATTTTGATAAATTTAACTACTTCTGAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGATTCATTAGCGCTTTGGCTTCAATATTGGACACCGATGAGCTCCTTGTGCAGGAGCAAGCTGTCTATTGTCTCCTAATTTTGTGCAACAGTAGTGAGCAATGTTCTGACATGGTTCTTCAAGAAGGGGTTATACCAGCGTTGGTATCCATATCAGTGAATGGGACCCCAAGAGGGAGAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGACAGCAGCGACGAGATGATTCACCTGTTGAGGAACATCAATGTCCTCCTGAAACCAGTGATTTGTCTATGCCGCCTGCTGAAATGAAACCTCCATGTAAGTCTATGTCTAGAAGAAAGACTGGGAAAGGTTTTAGCTTATTCTGGAGAAGCAAAAGCTATTCTGTGTACCAGTGTTGA 2298 0.4134 MMDAVEVEENLFAVSDAKLHGQMCKALSVIYCQVLSIFPSLEAARPRSKTGIQALCSVHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVREIVNEFASVEFALDPLEKQVGDDLIALLQQGKKFDNYSECNELESFHQAATRLVITSSRAALAERRALKKLIERARAEEDKRKESIVAYLLHLMRKYSKLFRNEFSDDNDSQGSAPCSPTVQGSTEDAVPVSYNQAFDRQFSKLSSFGFKPNNNMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFGDGHDNCPKTQQKLPHLYLTPNYCVKGLVASWCEQNGISIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLEDGCISEEYGENGAESVSAQEEDTEQYLSFLKVLTEGNNWKRKYEVVEQLRLLLRDDEEARILMGGNEFVEALVQFLQSAVHERNLMAQESGAMALFNLSVNNDRNKETMLSAGVLPLLEEMITNTSSYGCATALYVNLSCLEEAKPLIAMSQAVQFLIQLLQSDFDIQCKQDSLHALYNLSTVPSNIPHLLSSGIVNGLQSLLVDQVDCTWIEKCIAILINLTTSEVGREEMVSTPGFISALASILDTDELLVQEQAVYCLLILCNSSEQCSDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFRQQRRDDSPVEEHQCPPETSDLSMPPAEMKPPCKSMSRRKTGKGFSLFWRSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01113 765 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Car06g01113 765 PANTHER U BOX DOMAIN-CONTAINING 2 757 - -
Car06g01113 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 757 - -
Car06g01113 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Car06g01113 765 MobiDBLite consensus disorder prediction 711 746 - -
Car06g01113 765 SUPERFAMILY RING/U-box 278 356 - -
Car06g01113 765 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Car06g01113 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Car06g01113 765 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Car06g01113 765 Coils Coil 176 196 - -
Car06g01113 765 SMART arm_5 456 500 IPR000225 GO:0005515
Car06g01113 765 SMART arm_5 541 582 IPR000225 GO:0005515
Car06g01113 765 SMART arm_5 624 666 IPR000225 GO:0005515
Car06g01113 765 SMART arm_5 501 540 IPR000225 GO:0005515
Car06g01113 765 CDD RING-Ubox_PUB 285 327 IPR045210 -
Car06g01113 765 Gene3D - 406 716 IPR011989 -
Car06g01113 765 SUPERFAMILY ARM repeat 429 708 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01113 Car-Chr6 10812427 10817977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01113 2 764 U-box Gene Family AT1G24330 64.267 0.0 1003
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01113 - - gmx:100794099 1233.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02032 05 65584002 65589373 Car06g01113 06 10812427 10817977 PCT