Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01093 ATGGAGGTGAATGCAAAATCTCCTTCTTCACTGTGGGAGTGGGATAATCTATCATTCTTCAATACAAAACCAACAGAAAATCCAAAGTTACAACCACCAAACTGGAGTATCGACCTAGACCAAGAAATCAATGTCGGTTTGTTGGATACATCTGGTGGAAGTGGTTGTTCTGGCTCTGAGCTAATTCATGCTTCTACATCTAGGAGTTTCAGTTCATCATCAAATAAGGATAGTAAAAAATGTATATTTGGTTTTGAAAGTTCACAAGATGATTCTAGTGGTAAAATGGAATTATCTAAAGATGAGCCAGTTGAAACTTGTAATGCACTACAGCTCTCTTCTGTGTCTGGTGAACCTTTACTAACCCTAAAACTTGGTAAAAGGGTGTACTTTGAGGATGTATGCCAAGAAACTGATTCGAAAAACCTAACTTTTTGTGTGGATCCTATGTCATCTTTAAGCATTGCAAAGAAATGTAAGTCCAATGGCCAGAACTTACAATGTCCACGATGCCAGGTTGAAGGTTGTAGCCTTGATCTTTCATCAGCTAAAGGTTACCATCGGAAACATAGAGTTTGTGAAACTCATTCCAAATCTCCTCTGGTGGTTATTGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTTTGAGTTCGATGAAAACAAGAGAAGCTGCAGAAAACGTCTTTCACATCACAATGCAAGGCGCCGAAAACCTCGTCTTGATGATCCTCTCCAATCAAGTCAATCAGCTTTGTCTCCCTCACACTGTGATGGGAATCAACAAACAAGTCCATTTGCTTATTCTAGGACTGCTACATATTTAGCCGGGCAAAATATACACAACGGCAAGCTCCCTCAAACAAAAGATTTTCTCTTAAAGCCTGTGAAAGACAACAGTGACATACCAAGTACTCTCACTATGCTTTCTGATGATTCCAACTTCCATTTTACATCCAGAATCCCTGCAACCAAGCGTATTGATCCAGGTGTTGAAGATTTCATTAGCTTCTCTGATACAAATGCTACACAAGACTTCAGTTGTGCTCGCTCTCTTCTGTCAACCAATCCATGGGATTTATACGAGACTAAATCCATTTCGCTAGAGCATTCTAATCGCACAACCAGTACCGCTCAAGCCATAGCGCACTCAATGAATCGTGGCATGCCTCTCTCTTCATCAGAATATTGGCATAATGATCGTGATCAACAAGTCAATTCCAACATGTGGATCTCAAACTCAAACTGTGAAGATAGGAACCACTTTCAAGAATTTTAA 1296 0.4028 MEVNAKSPSSLWEWDNLSFFNTKPTENPKLQPPNWSIDLDQEINVGLLDTSGGSGCSGSELIHASTSRSFSSSSNKDSKKCIFGFESSQDDSSGKMELSKDEPVETCNALQLSSVSGEPLLTLKLGKRVYFEDVCQETDSKNLTFCVDPMSSLSIAKKCKSNGQNLQCPRCQVEGCSLDLSSAKGYHRKHRVCETHSKSPLVVIAGLERRFCQQCSRFHALFEFDENKRSCRKRLSHHNARRRKPRLDDPLQSSQSALSPSHCDGNQQTSPFAYSRTATYLAGQNIHNGKLPQTKDFLLKPVKDNSDIPSTLTMLSDDSNFHFTSRIPATKRIDPGVEDFISFSDTNATQDFSCARSLLSTNPWDLYETKSISLEHSNRTTSTAQAIAHSMNRGMPLSSSEYWHNDRDQQVNSNMWISNSNCEDRNHFQEF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01093 431 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 19 431 - -
Car06g01093 431 MobiDBLite consensus disorder prediction 235 266 - -
Car06g01093 431 SUPERFAMILY SBT domain 169 248 IPR036893 GO:0003677|GO:0005634
Car06g01093 431 MobiDBLite consensus disorder prediction 250 266 - -
Car06g01093 431 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Car06g01093 431 Pfam SBP domain 171 244 IPR004333 GO:0003677
Car06g01093 431 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 431 IPR044817 GO:0003677
Car06g01093 431 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01093 Car-Chr6 10573996 10576890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01093 1 406 SBP-box Gene Family AT5G43270 39.480 1.85e-60 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car06g01093 SBP 9.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01093 - - mtr:MTR_8g080670 510.375