Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01090 ATGGGTTTTCTAGGTAATGGTAGCAAGATGTGGCTGAAATGTTGGGAGAAGATTTCAGTTCATGGTTACAAAATCCATCAACAGTACTATTTGTATATTGGGTCAAAGAAAGTGAAGAGAGAGTTATGGAGAAAGCTTTTGTTGACATGGGTGTTGGGTTGGATTGTAGTGTCTTTGTGGATCTTTTGTTGTATGAGGTTACAAGTTGTTGAAAAGAGGAAAGAAACTTTGGCAAGTTTGTGTGATGAAAGGGCTAGGATTGTGCAGGATCAGTTTAATGTTAGTATGAATCATATTCAAGCTATGTCAATTTTGATCTCAAGCTTTCATCATGCTAAGAGTCCCTCGGCCATTGATCAGAGAACATTTGCTAGGTACACAGAAAGGACAGCTTTTGAGAGGCCTCTAACAAGTGGTGTTGCATATGCTGTAAGAGTGTTACATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGTTGGATTATTAAAAGAATGGATACTTTGGAGCAGAATCCAGTTCATAAGGATGATTATGCCACAGAGGCATTGGAACAATCCTTTATTCAAGAAGAATATGCTCCTGTCATATTTGCACAAGATACTATTTCACATGTCATTTCTGTTGATGTGCTTTCTGGAAAGGAAGACCGTGATAATGTGTTACGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGAACCCTTCAGGCTTCTCAAATCAAATCGTCTAGGGGTTATTCTGACATTTGCTGTCTACAAGAGATATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTAATGGGTATCTTGGCGGGGTATTTGATGTTGAATCATTAGTGGAGAAATTACTTCAACAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTATATGACACTACAAATCATACTCATCCAATAGTCATGTATGGTAGTACAAATGTATCAGGGGATGTGTTCTGTCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAACATGAGATGCATTGCAGGTTCAAACAGAAACCACCATGGCCATGGTTGGCTATAACTACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTTGGACATATTTTTCATGCCACTGTGAATCGAATTGCCAAAGTAGAAGATGATTGCCGTGAGATGACAGAGCTTAAAAAACGCGCAGAGGCAGCCGATGTTGCAAAATCTCAATTTCTTGCCACTGTTTCTCATGAAATCAGAACACCAATGAATGGTGTTTTAGGGATGCTGCATATGCTTATGGACACAGATTTAGATGTAACTCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGTAAAGCTCTTGTGTCACTTATAAATGAAGTTTTGGATCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAAGCTGTGCTTTTTGATATACGGTCGATTTTGGATGATGTATTGTCACTATTTTCTGACAAGTCCCAAGGAAAAGGAGTTGAGTTGGCGGCTTATGTGTCAGATCATGTTCCTGAATTGCTAATAGGCGATCCCGGAAGGTTTCGGCAAATAATTACTAATCTCATGGGAAACTCAATTAAGTTCACCGACAAAGGACATATTTTTGTAACCATCCATCTTGTTGAGGAGATTGTTCATTCTATAGAGGTTGACAATGAATCAAATCCAGAAAATACATTGAGTGGTTTCGCCGTCACTAATAGTTGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGAAGGACCACTTGGTTCTTTCTCTTCCTCCTCTACTGATCTCATCAATTTGATTGTATCTGTTGAAGATACAGGTGAAGGCATACCTAGAGAAGCTCAATCCCTCATCTTCACTCCATTCATGCAAGTAGGTTCGTCGATCTCTCGAAAACATGGAGGAACAGGTATTGGACTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGCAAGTGAACCAAAGATTGGATCCACTTTCACCTTTACTTCTGTATTCACCAATGGACTCCTCAGTTCTAATGAGTGTAGAATACAGCAAATCAACAGATCTCAGCCTGCATCTTCAGAATTTGAGGGGATGAATGCATTGGTTATTGATCCAAGACCTGTTAGAGCAAAAGAAGTATGGTATAGAGATTCAAGCATGTCATCTCATTTTTTCAATAACACAAGGAAAATCGATCGTGGTTTTCCTCCGAAGTTGTTTATTCTTGTTAACTCTAGTTGCTCTTCTAAAACAAGCAGTGTAATCTCAGATGTTCATAATCCTACTATCATCACAAAACCTCTTAGAGCAAGCATGCTCGCTGTTTCGCTAGAGCGAGCCATGAATGTTGGTAACAAGAGAATTCCAAATAGGGATGTTCAAAGTTTGTCTCTTAGCCATCTTCTTTTTGGGAGGAAAATTCTTATTGTTGATGACAATGGCGTGAACCGCGCAGTAGCAGCCGGTGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCTATCTCTTCGCTGAAGCCACCTCATCAGTTCGACGCATGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGAAGCTACAAATATAATCAGAGAGATGGAACATAATGTGAACAGGGAAGTATCTAATGATGGTTTTGAGAATACATCAAACTGGCATGTGCCAATTTTAGCCATGACTGCAGATGTGATTCAAGCTACACATGAGAAATGCCTAAGGTGTGGAATGGATGGATATGTTTCTAAACCATTTGAAGCTGAACAACTTTATAGAGAAGTTTCTTGGTTTTTCTCGTCGTCTTGA 2841 0.3946 MGFLGNGSKMWLKCWEKISVHGYKIHQQYYLYIGSKKVKRELWRKLLLTWVLGWIVVSLWIFCCMRLQVVEKRKETLASLCDERARIVQDQFNVSMNHIQAMSILISSFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWIIKRMDTLEQNPVHKDDYATEALEQSFIQEEYAPVIFAQDTISHVISVDVLSGKEDRDNVLRARESGKGVLTEPFRLLKSNRLGVILTFAVYKRYLPSNATPNERIQATNGYLGGVFDVESLVEKLLQQLASKQSVIVNVYDTTNHTHPIVMYGSTNVSGDVFCHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDCREMTELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSDKSQGKGVELAAYVSDHVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEIVHSIEVDNESNPENTLSGFAVTNSCLSWKGFKAFSQEGPLGSFSSSSTDLINLIVSVEDTGEGIPREAQSLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFASEPKIGSTFTFTSVFTNGLLSSNECRIQQINRSQPASSEFEGMNALVIDPRPVRAKEVWYRDSSMSSHFFNNTRKIDRGFPPKLFILVNSSCSSKTSSVISDVHNPTIITKPLRASMLAVSLERAMNVGNKRIPNRDVQSLSLSHLLFGRKILIVDDNGVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFEATNIIREMEHNVNREVSNDGFENTSNWHVPILAMTADVIQATHEKCLRCGMDGYVSKPFEAEQLYREVSWFFSSS 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01090 946 Pfam CHASE domain 117 313 IPR006189 -
Car06g01090 946 SMART REC_2 810 939 IPR001789 GO:0000160
Car06g01090 946 Pfam His Kinase A (phospho-acceptor) domain 402 465 IPR003661 GO:0000155|GO:0007165
Car06g01090 946 SMART CHASE_2 114 315 IPR006189 -
Car06g01090 946 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 388 468 IPR036097 GO:0000155|GO:0007165
Car06g01090 946 Gene3D - 370 465 - -
Car06g01090 946 CDD HisKA 402 463 IPR003661 GO:0000155|GO:0007165
Car06g01090 946 Pfam Response regulator receiver domain 812 938 IPR001789 GO:0000160
Car06g01090 946 Gene3D - 65 117 - -
Car06g01090 946 Gene3D - 466 677 IPR036890 -
Car06g01090 946 ProSiteProfiles Histidine kinase domain profile. 409 677 IPR005467 -
Car06g01090 946 Coils Coil 379 399 - -
Car06g01090 946 SUPERFAMILY CheY-like 809 940 IPR011006 -
Car06g01090 946 CDD HATPase_EvgS-ArcB-TorS-like 519 672 - -
Car06g01090 946 SMART HKATPase_4 514 677 IPR003594 -
Car06g01090 946 CDD REC_hyHK_CKI1_RcsC-like 812 939 - -
Car06g01090 946 ProSiteProfiles Response regulatory domain profile. 811 943 IPR001789 GO:0000160
Car06g01090 946 Gene3D CHASE domain 118 348 IPR042240 -
Car06g01090 946 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 514 673 IPR003594 -
Car06g01090 946 PANTHER HISTIDINE KINASE 3 716 945 - -
Car06g01090 946 PANTHER HISTIDINE KINASE 3 18 716 - -
Car06g01090 946 ProSiteProfiles CHASE domain profile. 114 341 IPR006189 -
Car06g01090 946 PANTHER TWO-COMPONENT HISTIDINE KINASE 18 716 - -
Car06g01090 946 PANTHER TWO-COMPONENT HISTIDINE KINASE 716 945 - -
Car06g01090 946 SMART HisKA_10 402 467 IPR003661 GO:0000155|GO:0007165
Car06g01090 946 Gene3D - 807 945 - -
Car06g01090 946 PRINTS Bacterial sensor protein C-terminal signature 620 630 IPR004358 GO:0016310|GO:0016772
Car06g01090 946 PRINTS Bacterial sensor protein C-terminal signature 602 616 IPR004358 GO:0016310|GO:0016772
Car06g01090 946 PRINTS Bacterial sensor protein C-terminal signature 661 674 IPR004358 GO:0016310|GO:0016772
Car06g01090 946 PRINTS Bacterial sensor protein C-terminal signature 637 655 IPR004358 GO:0016310|GO:0016772
Car06g01090 946 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 456 672 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01090 Car-Chr6 10544272 10550314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01090 10 945 Miscellaneous Gene Families AT1G27320 66.769 0.0 1286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car06g01090 CHASE 2.6e-37 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01090 K14489 - gmx:100776798 1573.14