Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01088 ATGGCATCTGGTTACGAATACGATATTAATGATCTGTATCAAGAAGCTCAAAGGAGATGGCTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAAAAGTATCAGTTCACCCAAGAGCCCCCGCAACAGCCGACAAGTGGTTCCCTGTTTCTGTTTAACAGAAGAGTATTGCGTTTCTTCCGTAGAGACGGCCACGCTTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCCCACGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGATCCCTACGTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTCGTGCATTACAGAGACACTAGTGAGGGAAGGCTCAGCTCTGGACCTGGCACACAATTGTCACCGGGTTCCTCTTCTGCGTTCAGTCAGAGTCCTAGCTCATATAGTAATCAGAACCCAGGGTCAACATCCATTGTTGATGATTCCTATGAACGTAATCAGAGTTTCTCAAGTCCTGGATCTGCTGAAGTGACCTCTGATATATTCATTTTGAACAATGGAATGGCTCACTTGGAAGGAGCAGATGCAGAATCAGGAACCTCAACTGAACTTAAGATTACTCAGGCTTTGCGCCGATTGGAGGTGCAGTTAAGTTTGAATGAGGACAACTTTGAAGAAATTGCTCCCTTCAGCAATGAGGATGAAGCTACACGTGATTCAAAACCTCAGAACCATCAAGGGGTGATCTGCAAGCAAGAGAAATCTGAAGCTCTTTCTGGACCAGACGATCAGGGGCAATTTTGTGATGGATATAATGCAAGGCAAGGTGATAGTGGTCAAAGTTATCGTGAATTTCTAGACCATGATTTCCCTGACGGAAATGAGAAGGTTTTATCTTGGACAGAGTTAAAGAAATTAAACAAGTTTTCATCTGTGGCCTCACCCCAAAAAAATGTATACATGCCAGCTGGAAATGACGGTTCACCATCTGTTTCAATAAGGGAACCAGTTACCAGTCCGGAAAACTGTTGCTGGACAAATTTCAATACTAATATTAATAATGCTGGAAACTCTGTTTTTTCACTTCCTCAAGATGTTGGTGGAGTCACACTTCCTCCATATTCTTCTATGGTAGAAACAAGAGAAATTCATTCTGGCTACTATGCGACATTGTTTGACCAAAGCCAAATTGGAGCATCTCTGGAAGCAGGTTCAAGCTTAACTGTTTCACAAAAACAGAAATTTACTATTAAGGCAGTTTCCCCAGAATGGGGTTATGCCTCTGAAACTACAAAGGTTTTCATTATTGGGTCTTTTCTCTGTCATCCCTCTGATTCTGCCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATGATTCAGGATGGTGTAATGTGTTGTGAAGTTCCATCTCACATTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAATCGTGCAGTGAAGTAAGAGAGTTTGAGTATCGAGATAAGACGAAGAGCTGCACCCACTGCACTCCATCAGAAACAGAAGCCACCAGAACTCCAGAAGAACTGTTATTACTTGTTAGGTTCGGGCAGATGCTCCTTTCTGCATCATCTGTAAGTAATGATAATAACAACGAATCAGGAATTATCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTATTTGGTAGTGGAACTTCTTTTGGTACTATCAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTACAGCTGTGGCTTACTTGCAGACCCTGGGAAGCAGATGAAGAGACAGGCTGTTCTTTAACCAAGAAAGAGCAGGGGATTATTCACATGGTTGCTGGCTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTCAATATAAATTTCCGCGACATCAACGGCTGGACTGCCCTTCATTGGGCGGCACGTTTTGGAAGGGAAAAAATGGTTGCGTCACTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAATCGGTAAAACTGCGGCAGCAATTGCATCCAGCAGTGGGCATAAGGGACTGGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATTTGTCATCGCTTAAACTAGAAGAGAGTGAGCTATCGAAAAGTTCTGCCGAGCTTCAAGCAGATTTAACGGTTAGTAATGTCTCCAAGGAAAATATTGCTTCCAGTGAAGATCCAACCTCGCTCAAAGATACCTTAGCTGCTATCAGAAATACAACTCAAGCAGCTGCACGGATACAAGCTGCTTTCCGTACACATTCATTTAGAAAACGGAGAGCAAACGAAGCAGTTGCTGGTATGAGCAGACATGATATCAGTGCAAGTAGCATTGGTAATATGCCGGAGCTTTCTGCTATGTCAAAACTTGCTTTTCGGAACCCACGTGAATTTAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAAGTCGCAGAGATTTCCTATCATTGCGCCAAAAAGTAGTTAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGGAGAAAAAGATCTGGTTTACGAGGTTTCCGGCCAGAGATGGAGACTAATGAAAATCAAGATGAAGATATTCTCAAGGTGTTTCGAAAACAGAAAGTAGATGTAGAAATTGAAGAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGTCAGCAATATCATCGCATGCTTGAGAAGTTTCGTCAAGCCAAGGCTGAACTTTTGGCGAGTACGAGTGAAGAAAAATTGTTATCAACTTCTGTAGAAGATTATCTCAACATGGAAGATGATTATTATCAATACCCGTAG 2967 0.4317 MASGYEYDINDLYQEAQRRWLKPAEVMYILQNHEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEQIPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGSSSAFSQSPSSYSNQNPGSTSIVDDSYERNQSFSSPGSAEVTSDIFILNNGMAHLEGADAESGTSTELKITQALRRLEVQLSLNEDNFEEIAPFSNEDEATRDSKPQNHQGVICKQEKSEALSGPDDQGQFCDGYNARQGDSGQSYREFLDHDFPDGNEKVLSWTELKKLNKFSSVASPQKNVYMPAGNDGSPSVSIREPVTSPENCCWTNFNTNINNAGNSVFSLPQDVGGVTLPPYSSMVETREIHSGYYATLFDQSQIGASLEAGSSLTVSQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSAWACMLGDVEVPVEMIQDGVMCCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTKSCTHCTPSETEATRTPEELLLLVRFGQMLLSASSVSNDNNNESGIIIKQKADDDSWSHIIEALLFGSGTSFGTINWLLEELLKDKLQLWLTCRPWEADEETGCSLTKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAAAIASSSGHKGLAGYLSEVALTSHLSSLKLEESELSKSSAELQADLTVSNVSKENIASSEDPTSLKDTLAAIRNTTQAAARIQAAFRTHSFRKRRANEAVAGMSRHDISASSIGNMPELSAMSKLAFRNPREFNSAALSIQKKYRGWKSRRDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKRSGLRGFRPEMETNENQDEDILKVFRKQKVDVEIEEAVSRVLSMVKSPDARQQYHRMLEKFRQAKAELLASTSEEKLLSTSVEDYLNMEDDYYQYP 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01088 988 Gene3D - 536 719 IPR036770 -
Car06g01088 988 ProSiteProfiles IQ motif profile. 853 878 IPR000048 GO:0005515
Car06g01088 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 5 980 - -
Car06g01088 988 Pfam IPT/TIG domain 425 508 IPR002909 -
Car06g01088 988 ProSiteProfiles IQ motif profile. 831 859 IPR000048 GO:0005515
Car06g01088 988 SMART CG_1_2 12 130 IPR005559 GO:0003677
Car06g01088 988 ProSiteProfiles Ankyrin repeat profile. 654 686 IPR002110 GO:0005515
Car06g01088 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 772 877 IPR027417 -
Car06g01088 988 MobiDBLite consensus disorder prediction 238 278 - -
Car06g01088 988 Pfam Ankyrin repeats (3 copies) 636 714 IPR002110 GO:0005515
Car06g01088 988 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Car06g01088 988 MobiDBLite consensus disorder prediction 133 183 - -
Car06g01088 988 SUPERFAMILY E set domains 425 509 IPR014756 -
Car06g01088 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 980 - -
Car06g01088 988 SMART iq_5 829 851 IPR000048 GO:0005515
Car06g01088 988 SMART iq_5 771 793 IPR000048 GO:0005515
Car06g01088 988 SMART iq_5 852 874 IPR000048 GO:0005515
Car06g01088 988 Gene3D - 829 878 - -
Car06g01088 988 Gene3D Immunoglobulins 418 514 IPR013783 -
Car06g01088 988 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Car06g01088 988 ProSiteProfiles Ankyrin repeat region circular profile. 654 680 - -
Car06g01088 988 Pfam IQ calmodulin-binding motif 832 850 IPR000048 GO:0005515
Car06g01088 988 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Car06g01088 988 SMART ANK_2a 654 683 IPR002110 GO:0005515
Car06g01088 988 SMART ANK_2a 897 926 IPR002110 GO:0005515
Car06g01088 988 CDD IPT 425 510 - -
Car06g01088 988 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Car06g01088 988 SUPERFAMILY Ankyrin repeat 623 715 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01088 Car-Chr6 10530183 10538227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01088 362 960 CAMTA Transcription Factor Family AT1G67310 59.868 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Car06g01088 CG-1 1.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01088 K21596 - gmx:100786880 1447.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02003 05 65331083 65339491 Car06g01088 06 10530183 10538227 PCT