Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01076 ATGGAAGAGGATTTCGAGTTTCCAACATCTGGTGACGTGGAAATGCCAGAAGAAGATGAGATTGTGAGTCCGATCCACAAGGTTGGCGAAGAGAAGGAGATTGGGAATAATGGACTGAAGAAGAAGCTTGTTAAGGAAGGTGAAGGTTGGGAAACTCCTAATACTGGAGATCAAGTTGAAGTGCATTATACTGGAACTTTGCTTGATGGAACCAAATTTGATTCTAGTCGTGATAGGGATACCACTTTCAAGTTTAAGCTTGGTGAAGGGCAAGTGATTAAGGGGTGGGATGAAGGTATCAAAACCATGAAGAAGGGTGAAAATGCCATTTTCACAATACCCCCAGAATTGGCTTATGGAGAGTCTGGATCTCCTCCCACTATTCCTCCAAACGCAACTCTTCAGTTTGATGTGGAGTTGTTGTCTTGGACAAGTGTCAAAGACATTTCCAAGGATGGTGGAATATTGAAGAACATAATAACTGAAGGGGAGAAATGGGACAATCCTAAGGACCTAGATGAAGTATTTGTTAAGTATGAAGCTCGTCTTGAAGATGGGGCAATTATTTCAAAATCTGACGGGGTGGAGTTCACTGTTGAAGAGGGATATTTCTGTCCTGCTTTGGCTAAGGCTGTAAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTTAAGCCAGAATATGCATTTGGTGAGAATGGGAAACCGTCATCAGGAGATGACGGGGTCGTACCTCCAAATGCTTCGCTCCAAATAGATCTTGAGTTAGTCTCGTGGAAGACTGTATCTGACATTACCAAGGATAGGAAGGTCCTTAAGAAGACCTTGAAGGAAGGAGAGGGATATGAACGACCTAATGATGGAGCTGTTGTTCAGGTGAAACTTATTGGGAAGCTGCAAGACGGAACAGTCTTCCTTAAGAAGGGTCATGATGATGATCAGCCATTTGAATTCAAAATTGATGAAGAGCAAGTTATTGATGGACTTGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAACTGCATTGGTGATCATACAGCCTGAGTATGCTTTTGGTCCATCTGGGTCCCCTCAGGAATTGGCTACCGTTCCTCATAATTCCACCCTTTACTATGAAGTTGAGCTTATTTCCTTTGTAAAGGAAAAGGAATCGTGGGATCTGAATACTCAAGAGAAGATTGAGGCGGCTGGAAAGAAAAAGGAAGAGGGGAATGCATTGTTCAAAGCCAGTAAACACGAAAGAGCATCAAACCGATATGAGAAGGCCATAAAGTATATTGAGTATGATTCATCCTTCAGTGATAAGGAGAAACAGCAGGCCAAAGCATTGAAAATTACATGCAATCTTAACAACGCGGCCTGTAAGTTGAAACTCAAGGACTACAAACAGGCAGAGAAGTTGTGCACAAAGGTGTTAGAGCTTGATAGTAGGAATGTAAAAGCACTATACCGGAGGGCACAAGCACATATTCATCTTGTTGACTTGGATTTGGCTGAAATGGATATCAAGAAAGCCCTTGAAATTGATCCAGATAACAGGGATGTTAAGATTGAGTACAAAATTCTGAAGGACAAAGTGAGAGAATACAACAAGAAGGATGCACAATTTTATGGCAACATATTTGCCAAACTGAATAAAGTAGAACAGGCAAGAACTGCAGCAGCAAAGCAGGAATCTGCACCGATGGCTGTAGATAGTAAAGCTTAA 1713 0.4174 MEEDFEFPTSGDVEMPEEDEIVSPIHKVGEEKEIGNNGLKKKLVKEGEGWETPNTGDQVEVHYTGTLLDGTKFDSSRDRDTTFKFKLGEGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDISKDGGILKNIITEGEKWDNPKDLDEVFVKYEARLEDGAIISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLNVKPEYAFGENGKPSSGDDGVVPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFLKKGHDDDQPFEFKIDEEQVIDGLDRAVKNMKKGETALVIIQPEYAFGPSGSPQELATVPHNSTLYYEVELISFVKEKESWDLNTQEKIEAAGKKKEEGNALFKASKHERASNRYEKAIKYIEYDSSFSDKEKQQAKALKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAHIHLVDLDLAEMDIKKALEIDPDNRDVKIEYKILKDKVREYNKKDAQFYGNIFAKLNKVEQARTAAAKQESAPMAVDSKA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01076 570 Gene3D - 148 261 IPR046357 GO:0003755
Car06g01076 570 SUPERFAMILY FKBP-like 263 398 - -
Car06g01076 570 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Car06g01076 570 PANTHER PEPTIDYLPROLYL ISOMERASE 380 551 - -
Car06g01076 570 PANTHER PEPTIDYLPROLYL ISOMERASE 270 380 - -
Car06g01076 570 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Car06g01076 570 SUPERFAMILY FKBP-like 147 263 - -
Car06g01076 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Car06g01076 570 Gene3D - 31 147 IPR046357 GO:0003755
Car06g01076 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Car06g01076 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 270 380 - -
Car06g01076 570 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 380 551 - -
Car06g01076 570 Coils Coil 514 534 - -
Car06g01076 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Car06g01076 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Car06g01076 570 SUPERFAMILY TPR-like 387 546 IPR011990 GO:0005515
Car06g01076 570 SUPERFAMILY FKBP-like 31 154 - -
Car06g01076 570 Pfam Tetratricopeptide repeat 458 514 - -
Car06g01076 570 Gene3D - 262 383 IPR046357 GO:0003755
Car06g01076 570 Gene3D Tetratricopeptide repeat domain 384 541 IPR011990 GO:0005515
Car06g01076 570 SMART tpr_5 481 514 IPR019734 GO:0005515
Car06g01076 570 SMART tpr_5 398 431 IPR019734 GO:0005515
Car06g01076 570 SMART tpr_5 447 480 IPR019734 GO:0005515
Car06g01076 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Car06g01076 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 378 IPR001179 GO:0003755
Car06g01076 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 258 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01076 Car-Chr6 10426366 10429963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01076 15 570 Calmodulin-binding Proteins AT5G48570 72.679 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01076 K09571 - gmx:100819747 1009.59