Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01070 ATGCTCCAAATCTCATTATTCGTCTTTTCAATCATCATCACCGCCGCCACCATCACGGTTGTCGCTGATGATGCCGCCGTCACCACTAACCTCCTCGAATCTCTAAAACCAACACCCTCCGGCTGGTCTTCCAAAACACCATTCTGTCAATGGCAAGGAATCACATGCGATTCATCAAACCGCGTCACCACCATAGACCTCCACTCAAAATCACTCACCGGAACCCTCCCTTCAAATCTCAACTCCCTCTCTCAACTCACCATACTCAATCTCCAAAACAATGCTCTCTCCGGTACACTCCCTTCCCTATCTAACCTATCCTATCTCCAGTCCGCATTCCTCGGCTCCAATAACTTCACCTCCGTCCCTTCCGCCGCATTTTCTGGACTCACTTCGCTCCAAGACCTCCGCCTCGGTAATAACATTAACCTCTCACCATGGACATTTCCCACCGAGTTGACTCAGTGTTCCAGCCTCAACTCACTCGATCTCACGTCCTCCGGAATCAACGGTAACTTACCGGACATATTCGATAAATTCCCTAGTCTAGTCAGCCTTCGTCTCTCTTACAACAATCTCACCGGCGAGTTACCTAACTCTCTTGCTGCTTCATCAATTCAGGAGCTATGGCTCAATAATCAGGGGTTAACCGGTTCCATCGCCGTGCTTTCTAACATGACGCAGTTAACTCAGGTATGGCTTCATGTTAATCAGTTCACTGGTCCAATTCCAGATTTATCGCAATGTAAGAATCTAATTGATCTGAAACTTAGAGATAACAAGTTAACTGGTGTGGTTCCTAATTCTCTGATGAGTTTGTCTAGTTTGAAGAATGTTTCTCTTGATAACAATAAACTTCAGGGACCTGTTCCTGTTTTTGCTAAAGATGTGCAATTTAATCCTGATTTCGGGGTTAATAGCTTTTGTCTTGATAAACCTGGACCTTGTGATGCTAGGGTCATGGTTTTGCTTCAAATTGCTGAGGCATTTGGGTATCCTTTTGTATTGGCGAATGAGTGGAAAGAGAATGATCCTTGTAAATCTTGGAGATTTGTTACGTGTAATGGGGGTAAGATTGTCAGCTTGTATTTCGGGAAGCAAGGTTTCCAGGGAACTATTTCGCCGGCTTTTGCCAATTTAACTGATTTGAGGAGTTTGAATCTTAATGGGAATAATTTGACTGGTTCTATACCGGAGAGTTTGACCACATTGTCTCAGCTTGAGACTCTCGATGTCTCAAACAATAATCTCTCAGGCGTGGTTCCCAAATTCTCATCAAAGGTGAAGTTAGTAACTGATGGTAATGCATTGATTGGTAAAACTCTTGGTCCTGATGGTCATACTTCTAGTGGGTCAGCTGCTGGATCGGGAAATGGTAGGATGACACCGGGTTTGGTTGCTGGTATAGTGATCATTGTTGTGTTTTTGGTTGCTGCTGTGTTGTTTGTTTCTTTCAAGTGTTATGCTAGAAGACGGCTTCGGAAATTTTCAAGGGTTAGTAATCCTGAAAGTGGGAATGGAAATATAAAGCTTGATCTTGCGAGTGTTTCAAATGGATATGGCGGTGTTCCGAGCGAGTTGCAAAGCAAGAGCAGTGGTGATCATAGTGAACTTTATGGTTTTGATGGGGGGAGTGGTGGAAATGCTACAATTTCGATTCATGTTCTTAGACAAGTGACGAATAATTTCAGCGACGAAAACATTTTGGGAAGAGGAGGGTTTGGTGTTGTTTATCAAGGGGAGTTACCTGATGGGACTAAAATTGCTGTCAAGAGGATGATATCTGTTGCAACGGGCAGCAAAGGGTTGAATGAGTTCCAAGCAGAGATTGCTGTTCTTACTAAAGTTAGGCATCGGCATTTGGTTGCTCTTTTGGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACACTAACACAGCATCTGTTTGAATGTAGTGAACATGGGTATACTCCTTTGACATGGAAACAAAGGTTGGCAATAGCTTTGGATGTGGGACGGGGAGTGGAATACTTGCACAGCCTAGCTCAGCAAAGCTTCATTCATAGAGACCTAAAACCATCAAATATACTATTAGGCGATGACTTGAGAGCAAAGGTTGCTGATTTTGGGTTGGTTAAAAACGCACCGGATGGGAAGTATTCTGTTGAGACAAAGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCAGCTACTGGAAGAGTAACAACCAAAGTGGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACAGGTAGAAAGGCATTGGATGATACTATTCCTGATGAAAGGTCTCATTTAGTTACGTGGTTCCGAAGGGTACTGATTAACAAGGAAAACATTCCAAAGGTAATTGATCAAACTCTGAACCCAGATGAGGAAACAATGGAGAGCGTGTATAAAGTGGCTGAGCTGGCTGGCCATTGCACTGCTCGTGAACCATACCAAAGGCCAGATATGGGACATGCAGTGAATGTTTTGGGTCCCCTTGTGGAGCTATGGAAACCTATCACCCATACAGAAGAATACAGTTATGGCATTGACAATCAGAGTCTTCCTCAAGCACTGCAAAGGTGGCAAGACAATGAAGGCACTTCAACAATATTTAATGGCATGTCCTTCTCACAAACCCAATCAAGTAGTACCATCCCTTCTAAACCTCCATTATTTGCAGATTCCTTTGGTTCAACAGATTGCAGGTAA 2739 0.4356 MLQISLFVFSIIITAATITVVADDAAVTTNLLESLKPTPSGWSSKTPFCQWQGITCDSSNRVTTIDLHSKSLTGTLPSNLNSLSQLTILNLQNNALSGTLPSLSNLSYLQSAFLGSNNFTSVPSAAFSGLTSLQDLRLGNNINLSPWTFPTELTQCSSLNSLDLTSSGINGNLPDIFDKFPSLVSLRLSYNNLTGELPNSLAASSIQELWLNNQGLTGSIAVLSNMTQLTQVWLHVNQFTGPIPDLSQCKNLIDLKLRDNKLTGVVPNSLMSLSSLKNVSLDNNKLQGPVPVFAKDVQFNPDFGVNSFCLDKPGPCDARVMVLLQIAEAFGYPFVLANEWKENDPCKSWRFVTCNGGKIVSLYFGKQGFQGTISPAFANLTDLRSLNLNGNNLTGSIPESLTTLSQLETLDVSNNNLSGVVPKFSSKVKLVTDGNALIGKTLGPDGHTSSGSAAGSGNGRMTPGLVAGIVIIVVFLVAAVLFVSFKCYARRRLRKFSRVSNPESGNGNIKLDLASVSNGYGGVPSELQSKSSGDHSELYGFDGGSGGNATISIHVLRQVTNNFSDENILGRGGFGVVYQGELPDGTKIAVKRMISVATGSKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEHMPQGTLTQHLFECSEHGYTPLTWKQRLAIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDLRAKVADFGLVKNAPDGKYSVETKLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDDTIPDERSHLVTWFRRVLINKENIPKVIDQTLNPDEETMESVYKVAELAGHCTAREPYQRPDMGHAVNVLGPLVELWKPITHTEEYSYGIDNQSLPQALQRWQDNEGTSTIFNGMSFSQTQSSSTIPSKPPLFADSFGSTDCR 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01070 912 ProSiteProfiles Leucine-rich repeat profile. 85 107 IPR001611 GO:0005515
Car06g01070 912 Gene3D Phosphorylase Kinase; domain 1 532 640 - -
Car06g01070 912 Pfam Protein tyrosine and serine/threonine kinase 567 837 IPR001245 GO:0004672|GO:0006468
Car06g01070 912 Pfam Leucine rich repeat 376 417 IPR001611 GO:0005515
Car06g01070 912 Gene3D Transferase(Phosphotransferase) domain 1 641 854 - -
Car06g01070 912 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 6 912 - -
Car06g01070 912 Gene3D Ribonuclease Inhibitor 318 442 IPR032675 -
Car06g01070 912 Pfam Leucine rich repeat N-terminal domain 322 355 IPR013210 -
Car06g01070 912 Pfam Leucine rich repeat N-terminal domain 35 57 IPR013210 -
Car06g01070 912 SUPERFAMILY Protein kinase-like (PK-like) 551 863 IPR011009 -
Car06g01070 912 SMART LRR_typ_2 180 204 IPR003591 -
Car06g01070 912 SMART LRR_typ_2 404 426 IPR003591 -
Car06g01070 912 SMART LRR_typ_2 106 129 IPR003591 -
Car06g01070 912 SMART LRR_typ_2 380 403 IPR003591 -
Car06g01070 912 SMART LRR_typ_2 83 105 IPR003591 -
Car06g01070 912 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672|GO:0006468
Car06g01070 912 MobiDBLite consensus disorder prediction 883 899 - -
Car06g01070 912 ProSitePatterns Protein kinases ATP-binding region signature. 569 591 IPR017441 GO:0005524
Car06g01070 912 ProSiteProfiles Protein kinase domain profile. 563 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01070 912 MobiDBLite consensus disorder prediction 883 912 - -
Car06g01070 912 SMART serkin_6 563 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car06g01070 912 PANTHER OSJNBA0070M12.3 PROTEIN 6 912 - -
Car06g01070 912 CDD STKc_IRAK 569 842 - -
Car06g01070 912 SUPERFAMILY L domain-like 28 430 - -
Car06g01070 912 Gene3D Ribonuclease Inhibitor 26 316 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01070 Car-Chr6 10361877 10366475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01070 31 875 Receptor kinase-like Gene Family AT1G55610 30.230 7.36e-94 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Car06g01070 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01070 - - gmx:100286794 1268.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01070 06 10361877 10366475 Car06g01070 06 10361877 10366475 ECH