Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01060 ATGGATGCTGCGCCACACTCTTCCACCGCCGCCACCGGTggtccagcgccgttccttctgaaaacttatgatatggtggacgattccggcacggacgagatcgtctcatggagctctaccaacaacagcttcgtcgtttgggaccctcccgaatttgctcgcgttctcctcccaacctatttcaaacacaacaatttctccagcttcatccgacagctcaacacctatGGATTTCGAAAAATACATCCCGAGCGGTGGGAGTTTGGTAATGACGAATTTATAAAAGATCAAAAGCATCTTCTCAAGAATATACACCGCAGGAAACCTATACACAGTCATAGTCATCCTCCAGGTTCTGTTGCAGATCCAGAAAGGGCAGCATTTGAAGAAGAAATAGAGAAACTTTCACGCGAGAAAAATTCTCTTGAATCCAATCTATTTAACTACAAACAGAATCAGTCAACAGCAAAGCTTCAGCTGGAAGACTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGACAAATTTGCTGAGCTTCTTTGAGCAGGCTCTTCAGAATCCTTCTTTTGTCGAACATCTTTCGCGCAAAATTGAATCCATGGATTTGGCGGCTTATAATAAGAAAAGGCGATTGCCTCAGATTGATCACGTGCAGCCTGTTGCTGAAGGTAGCTTGGTTGACAATCATAGTAATTTTAGGCTGGAATTCGGAAATGTTTTTCATCAAGATTTCTCGAATAAACTCAGGCTTGAATTGTCACCAGCTGTCTCAGATATGAACTTGGTATCTCGTAGCACACAGGGTTCAAATGAAGATGAGGAAAGTCTGCAGAAGAATCTGTCCGAAGGAGAACTGATAGGAATGCAGACAAGAACTGACCTTGGTTTTGTTCCTGAAACACTGGAGCTTGCAGATACTGGGGCATCTTTTACTTTTAACATGGATTCATGTTTATCGCGAAGAGCAGTGACTACTGAGTGCCCAAAACTTCACTCTCTGGAGCCAAGTAGTGAAGAGGGTGATAGTCATATATCCTGTCAACTGAATTTAACTCTGGCATCTTGTCCATTGGAATTCCACAGAAATTCGTACTCGGCCAGATCACCCCAAATCGACTGTCAAGAAATTGGCAATTTGGCAGAATCAAGATTTCTCGCCAACGGTAAAGAATTTGAAAATGGAGTTTCCTCAACCCGAAATGTGGCTAATGAGGTTGCCAATTTAGCTTTCTCGCAGGAGGCTCCAGTTAACAACCAAGTAAAGCCAGCTGCTCCACACAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAAGCAATATCCAACTATCGAGCAAATCCATACGATGAGCAAGAAGGACGGTCAGCTCATGGAATCTCTGGTAACATTAAGAATATGGATAATCTCACACTCTGA 1449 0.372 MDAAPHSSTAATGGPAPFLLKTYDMVDDSGTDEIVSWSSTNNSFVVWDPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFGNDEFIKDQKHLLKNIHRRKPIHSHSHPPGSVADPERAAFEEEIEKLSREKNSLESNLFNYKQNQSTAKLQLEDFQQRLDGMEKRQTNLLSFFEQALQNPSFVEHLSRKIESMDLAAYNKKRRLPQIDHVQPVAEGSLVDNHSNFRLEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQGSNEDEESLQKNLSEGELIGMQTRTDLGFVPETLELADTGASFTFNMDSCLSRRAVTTECPKLHSLEPSSEEGDSHISCQLNLTLASCPLEFHRNSYSARSPQIDCQEIGNLAESRFLANGKEFENGVSSTRNVANEVANLAFSQEAPVNNQVKPAAPHRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEGRSAHGISGNIKNMDNLTL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01060 482 Gene3D - 12 108 IPR036388 -
Car06g01060 482 MobiDBLite consensus disorder prediction 460 482 - -
Car06g01060 482 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 12 477 - -
Car06g01060 482 Coils Coil 125 173 - -
Car06g01060 482 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g01060 482 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 477 IPR027725 -
Car06g01060 482 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01060 Car-Chr6 10278474 10281540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01060 18 482 HSF AT4G13980 53.503 7.84e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car06g01060 HSF_DNA-bind 6.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01060 K09419 - gmx:100786408 796.193