Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01051 ATGGAGGAGTTGGATTTGGAAAGATCAGATGTAGAATCCCACAGCTGTTGGTGTGATTTAAGATTTCAAGAAATGACCTGCTTTTGTCATGATCAACCATGCCGAACTATATCGTGCTTCTTTTACTGGTTGATTGATGTTACATTCACATTGAAATCTATTGGAGCTTTGAGATACAGTTTTGCCGGGTTGATTTTCTCTTGTATAAAAATGAAGCAATTGTCATGGTTAGTGATGGTTCCATATTTCACTTATTGCAGTTCTATGCACTTTGACTGGTTTTCAGTCATCTTGGTGTTGTTAAGCAATGGATATGATGATCTTATGAGCAGCTGCAAAATGTCTTCACCAGATGGTTCTGTGAATGACCCGTTCGTTCGCGTATCAGTATTTCGACCCAAATCTCCAACATCAAACTTGGCCGTCAGACGGAGGAGAACAGGGTTGATGGCTGATCGGAGTTTAGCCGTTGTGAAGCCGGTTTGGATGAAGCAAGCCGAAGAAGCGAAGCTGAAGAGCGAAGCAGAGAAAGATGCGGCTGCCAAAGCTGCTTTTGAAGCCACGTTTAAGGGTTTGGTGAAAAGTCACGAGAAGAGGGCTGCTAATTCGGACAGTGATTCGGATGAATACGAGGATTTGGCCCATAAGCCCCTTGGGCCTGTGGATCCTTCCAAGTGCACTGCTGCTGGCACTGGAATTGCCGGAGGAACGGCCTGTGCTCCGTCTTCGTTCTCTGTGGTGACTAAGGATGCTGATGAGAGGAGGGTTTCAATTGGGGGTGCACAAATTAAGGTGAAAGTGACGCCAGGTTTGGGTGTTGGAGGGTCTGATCAAGAAGGGATTGTCAAGGATATGGGTGATGGAACTTACACTGTTACTTATGTGGTGCCTAAGCGAGGGAACTATATGGTTAATGTTGAATGTAATGGCAGGCCAATCATGGGTAGTCCATTCCCTGTCTTTTTCAGTGCAGGTAATGGTAATGGAGGGCTTTTGGGTTTAGCTCCTCCATCTTCATTTCCAAATCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGCTCCGTTTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGGATTGTTGCTGGAGCTTCTGGGGGGGCTATTTTGCCAGGAATTGGGGCTTCACTCGGGGAAGTTTGTCGCGATTACCTTAATGGGCGCTGTGCTAAAGTTGATTGTAAGTTGAATCACCCACCTCATAATTTGCTGATGACTGCCTTAGCTGCAACAACTTCAATGGGAACACTTAGCCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCAGCTGCCCAGGCAATAGTTGCGGCCAAAGCCCTTCAAGCTCATGCAGCTCAAGTGCAAGCTCAGTCAGCAAAAGATTCTACCGGTTCACCTGACAAAGCTAATAAGGAGGATGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCACTGTGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGCACAATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAACCCGAAGAGGCAACTGCGGCAATGGCTTTAAACAACATTGATGTTGGGGGGCGTCCTTTGAATGTTGAAATGGCAAAATCACTTCCGCCGAAATCAGCTATGAATTCTTCACTTGCTTCATCCTCCCTCCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAAATGCAATTCCAGCAAGCGCTGCTTATGCAACAAACTATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACAGATTTAGCAGCAGCACGAGCTGCAGAAATTAGTAAGAAATTGAATCCCGATGGACTTGAAATCGAAGAGAAAGAGACGAAACAGAAGTCCAGATCACCTTCTCCCCCTCCCGAAAGATCACGATCAAAGTCAAGATCTCCTATCAATTATCGGAGGAGGAGGAAGTCTCGTTCCTTCTCACCTGCTCGTCAATCTAAGGATCACCGGTCCAGGTCACCATTGAGGTTCCATCATCATTCAAGGTATGAAAGGGAATGGAGATCCTATAGAGAGAGCAGGGAACATAGTGATAGGTTCAGAAGACGAGATTCAGATAGATTTATTGATCATTCATCTGGTTCGAGAAGAAACAGAAGTAGGAGTGTTAGCCCTCATGCAAGGAGATCACCTGTTTCTCCTAAACGTCACACAGGAAGTTCGTCTCATAGAGGAAGGAAACAGTCTCGTGCTGATTCTGGCTCTCCAAGTCATTGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAAAAGAAAATAAGAAACAGAAGGCGCTCAAGGTCTAGATCTTCAGATGAAAAGCTTAACCTTTTTGACAAAAATGACGAAATCTTGCCTGAAAAGGCGAAACATAGAGAGCGAAGGCGGTCGAGGTCAGTGCCTGTGGACGAGAAGCCTCACAGGAACCAATCATCCCCAAGAAAAGTAGATGAAAGCAGACCTAGGCACAGGAAGCGGTCCAGGTCAAAATCTGTGGACGATAAGCATCACTTGTCTGACAGATTGGATGAAAACAGAAATAGAAGGTCAATATCTTCAGATGATAAGCTTAACCCCTCCGACAAAAACGAAGAAATCGTACATGAAAAATCTAAACATAGAGAGCGAAGGCGGTCCAGGTCCTTATCTGTTGACGATAAGCCTCCGAGGAGGCGATCGTCCCCAAGAAAAGTGGATGAAAGCAGATCCAGGCACAAGAAGCGATCCAGGTCAAGATCTGTGGACGATAAGCGTCACTTGTCTGCGAAATTGGATGAAAACAGAAATAGAAGATCAAGGCATAGTGATAAAAGGCGCTCCAGATCGAGATCTATGGAAAATAGGGACCGGGCTTATGTCAGAGAGGATGGAAGCAAACATGAAAAGTCAAAAAATCACGATACAAAATATAACAGGTCAGAATCTGATGAAGGGAAGCATCACTCTAAAGGTAAATCAGGTGAAAATAGAGATAAGAAATCAAAGCATCGCGATAGAAGGCATTCAAGGTCAATATCATCAGAAGGTAAGCATGACAAAGGAGGCACTTCAGCTCATAGAGAAGAGAGAGATTTTGAACACAAAAGATTCAGGTCGAAGTCTCCTAACGCCAAGCACCACGGCAATGATAAATATGGTAATAAAGATGAAAGATCAGAGCATCAAGAGAAAACCTTGTTTAAATCAAAAACAGAAAATCATCAGCAAGATGAAGGGAGTGGGCACTCCCCAAGAAATTTCAAGGAGTGTGAATCAAAAGGAAAAACAAAATCTGGTTCTAGATCTGCAGAATTTAAGCATCATTTGACCGATGGAGAAATGAAAACCCGAATTCAGATGGGTCAACTGGAAATGCAGGAGCTGATGATAACCCAGGGTGGAGATGTGTGGAAGAAGTTGGAAGTCGGAAATATTAAGCATGCTTGCCTTGGAGTGGTGGATCTCAACGATTTTACCTGGCTTTTGACAATGCTAACAACATAG 3552 0.4445 MEELDLERSDVESHSCWCDLRFQEMTCFCHDQPCRTISCFFYWLIDVTFTLKSIGALRYSFAGLIFSCIKMKQLSWLVMVPYFTYCSSMHFDWFSVILVLLSNGYDDLMSSCKMSSPDGSVNDPFVRVSVFRPKSPTSNLAVRRRRTGLMADRSLAVVKPVWMKQAEEAKLKSEAEKDAAAKAAFEATFKGLVKSHEKRAANSDSDSDEYEDLAHKPLGPVDPSKCTAAGTGIAGGTACAPSSFSVVTKDADERRVSIGGAQIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGRPIMGSPFPVFFSAGNGNGGLLGLAPPSSFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAKALQAHAAQVQAQSAKDSTGSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKSAMNSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATDLAAARAAEISKKLNPDGLEIEEKETKQKSRSPSPPPERSRSKSRSPINYRRRRKSRSFSPARQSKDHRSRSPLRFHHHSRYEREWRSYRESREHSDRFRRRDSDRFIDHSSGSRRNRSRSVSPHARRSPVSPKRHTGSSSHRGRKQSRADSGSPSHCRGSRSSPKIDEKKIRNRRRSRSRSSDEKLNLFDKNDEILPEKAKHRERRRSRSVPVDEKPHRNQSSPRKVDESRPRHRKRSRSKSVDDKHHLSDRLDENRNRRSISSDDKLNPSDKNEEIVHEKSKHRERRRSRSLSVDDKPPRRRSSPRKVDESRSRHKKRSRSRSVDDKRHLSAKLDENRNRRSRHSDKRRSRSRSMENRDRAYVREDGSKHEKSKNHDTKYNRSESDEGKHHSKGKSGENRDKKSKHRDRRHSRSISSEGKHDKGGTSAHREERDFEHKRFRSKSPNAKHHGNDKYGNKDERSEHQEKTLFKSKTENHQQDEGSGHSPRNFKECESKGKTKSGSRSAEFKHHLTDGEMKTRIQMGQLEMQELMITQGGDVWKKLEVGNIKHACLGVVDLNDFTWLLTMLTT 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01051 1183 SMART flmn_3 222 325 IPR001298 GO:0005515
Car06g01051 1183 ProSiteProfiles Zinc finger C3H1-type profile. 392 413 IPR000571 GO:0046872
Car06g01051 1183 MobiDBLite consensus disorder prediction 937 955 - -
Car06g01051 1183 Pfam Filamin/ABP280 repeat 220 318 IPR017868 -
Car06g01051 1183 MobiDBLite consensus disorder prediction 718 1121 - -
Car06g01051 1183 MobiDBLite consensus disorder prediction 624 649 - -
Car06g01051 1183 SMART rrm1_1 484 550 IPR000504 GO:0003723
Car06g01051 1183 Gene3D Immunoglobulins 220 326 IPR013783 -
Car06g01051 1183 MobiDBLite consensus disorder prediction 196 222 - -
Car06g01051 1183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 483 554 IPR000504 GO:0003723
Car06g01051 1183 CDD RRM_SF 485 550 - -
Car06g01051 1183 Gene3D - 444 565 IPR012677 -
Car06g01051 1183 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 150 904 - -
Car06g01051 1183 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 150 904 - -
Car06g01051 1183 ProSiteProfiles Filamin/ABP280 repeat profile. 218 322 IPR017868 -
Car06g01051 1183 MobiDBLite consensus disorder prediction 624 687 - -
Car06g01051 1183 Coils Coil 163 183 - -
Car06g01051 1183 MobiDBLite consensus disorder prediction 196 218 - -
Car06g01051 1183 MobiDBLite consensus disorder prediction 855 923 - -
Car06g01051 1183 MobiDBLite consensus disorder prediction 789 841 - -
Car06g01051 1183 MobiDBLite consensus disorder prediction 1024 1121 - -
Car06g01051 1183 SUPERFAMILY RNA-binding domain, RBD 469 562 IPR035979 GO:0003676
Car06g01051 1183 SUPERFAMILY E set domains 220 320 IPR014756 -
Car06g01051 1183 MobiDBLite consensus disorder prediction 962 1016 - -
Car06g01051 1183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 487 547 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01051 Car-Chr6 10191145 10201552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01051 470 553 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 7.16e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01051 - - cam:101491057 1612.43