Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01050 ATGTTTAGTGGAGAACATAAGAGTAAGAATGAGAAAGAAATCAATTTTAAACCTTGTGACCCGTTCGTTCGCGTATCAGTATTTCGACCCAAATCTCCAACATCAAACTTGGCCGTCAGACGGAGGAGAACAGGGTTGATGGCTGATCGGAGTTTAGCCGTTGTGAAGCCGGTTTGGATGAAGCAAGCCGAAGAAGCGAAGCTGAAGAGCGAAGCAGAGAAAGATGCGGCTGCCAAAGCTGCTTTTGAAGCCACGTTTAAGGGTTTGGTGAAAAGTCACGAGAAGAGGGCTGCTAATTCGGACAGTGATTCGGATGAATACGAGGATTTGGCCCATAAGCCCCTTGGGCCTGTGGATCCTTCCAAGTGCACTGCTGCTGGCACTGGAATTGCCGGAGGAACGGCCTGTGCTCCGTCTTCGTTCTCTGTGGTGACTAAGGATGCTGATGAGAGGAGGGTTTCAATTGGGGGTGCACAAATTAAGGTGAAAGTGACGCCAGGTTTGGGTGTTGGAGGGTCTGATCAAGAAGGGATTGTCAAGGATATGGGTGATGGAACTTACACTGTTACTTATGTGGTGCCTAAGCGAGGGAACTATATGGTTAATGTTGAATGTAATGGCAGGCCAATCATGGGTAGTCCATTCCCTGTCTTTTTCAGTGCAGGTAATGGTAATGGAGGGCTTTTGGGTTTAGCTCCTCCATCTTCATTTCCAAATCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGCTCCGTTTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGGATTGTTGCTGGAGCTTCTGGGGGGGCTATTTTGCCAGGAATTGGGGCTTCACTCGGGGAAGTTTGTCGCGATTACCTTAATGGGCGCTGTGCTAAAGTTGATTGTAAGTTGAATCACCCACCTCATAATTTGCTGATGACTGCCTTAGCTGCAACAACTTCAATGGGAACACTTAGCCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCAGCTGCCCAGGCAATAGTTGCGGCCAAAGCCCTTCAAGCTCATGCAGCTCAAGTGCAAGCTCAGTCAGCAAAAGATTCTACCGGTTCACCTGACAAAGCTAATAAGGAGGATGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCACTGTGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGCACAATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAACCCGAAGAGGCAACTGCGGCAATGGCTTTAAACAACATTGATGTTGGGGGGCGTCCTTTGAATGTTGAAATGGCAAAATCACTTCCGCCGAAATCAGCTATGAATTCTTCACTTGCTTCATCCTCCCTCCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAAATGCAATTCCAGCAAGCGCTGCTTATGCAACAAACTATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACAGATTTAGCAGCAGCACGAGCTGCAGAAATTAGTAAGAAATTGAATCCCGATGGACTTGAAATCGAAGAGAAAGAGACGAAACAGAAGTCCAGATCACCTTCTCCCCCTCCCGAAAGATCACGATCAAAGTCAAGATCTCCTATCAATTATCGGAGGAGGAGGAAGTCTCGTTCCTTCTCACCTGCTCGTCAATCTAAGGATCACCGGTCCAGGTCACCATTGAGGTTCCATCATCATTCAAGGTATGAAAGGGAATGGAGATCCTATAGAGAGAGCAGGGAACATAGTGATAGGTTCAGAAGACGAGATTCAGATAGATTTATTGATCATTCATCTGGTTCGAGAAGAAACAGAAGTAGGAGTGTTAGCCCTCATGCAAGGAGATCACCTGTTTCTCCTAAACGTCACACAGGAAGTTCGTCTCATAGAGGAAGGAAACAGTCTCGTGCTGATTCTGGCTCTCCAAGTCATTGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAAAAGAAAATAAGAAACAGAAGGCGCTCAAGGTCTAGATCTTCAGATGAAAAGCTTAACCTTTTTGACAAAAATGACGAAATCTTGCCTGAAAAGGCGAAACATAGAGAGCGAAGGCGGTCGAGGTCAGTGCCTGTGGACGAGAAGCCTCACAGGAACCAATCATCCCCAAGAAAAGTAGATGAAAGCAGACCTAGGCACAGGAAGCGGTCCAGGTCAAAATCTGTGGACGATAAGCATCACTTGTCTGACAGATTGGATGAAAACAGAAATAGAAGGTCAATATCTTCAGATGATAAGCTTAACCCCTCCGACAAAAACGAAGAAATCGTACATGAAAAATCTAAACATAGAGAGCGAAGGCGGTCCAGGTCCTTATCTGTTGACGATAAGCCTCCGAGGAGGCGATCGTCCCCAAGAAAAGTGGATGAAAGCAGATCCAGGCACAAGAAGCGATCCAGGTCAAGATCTGTGGACGATAAGCGTCACTTGTCTGCGAAATTGGATGAAAACAGAAATAGAAGATCAAGGCATAGTGATAAAAGGCGCTCCAGATCGAGATCTATGGAAAATAGGGACCGGGCTTATGTCAGAGAGGATGGAAGCAAACATGAAAAGTCAAAAAATCACGATACAAAATATAACAGGTCAGAATCTGATGAAGGGAAGCATCACTCTAAAGGTAAATCAGGTGAAAATAGAGATAAGAAATCAAAGCATCGCGATAGAAGGCATTCAAGGTCAATATCATCAGAAGGTAAGCATGACAAAGGAGGCACTTCAGCTCATAGAGAAGAGAGAGATTTTGAACACAAAAGATTCAGGTCGAAGTCTCCTAACGCCAAGCACCACGGCAATGATAAATATGGTAATAAAGATGAAAGATCAGAGCATCAAGAGAAAACCTTGTTTAAATCAAAAACAGAAAATCATCAGCAAGATGAAGGGAGTGGGCACTCCCCAAGAAATTTCAAGGAGTGTGAATCAAAAGGAAAAACAAAATCTGGTTCTAGATCTGCAGAATTTAAGCATCATTTGACCGATGGAGAAATGAAAACCCGAATTCAGATGGGTCAACTGGAAATGCAGGAGCTGATGATAACCCAGGGTGGAGATGTGTGGAAGAAGTTGGAAGTCGGAAATATTAAGCATGCTTGCCTTGGAGTGGTGGATCTCAACGATTTTACCTGGCTTTTGACAATGCTAACAACATAG 3243 0.4496 MFSGEHKSKNEKEINFKPCDPFVRVSVFRPKSPTSNLAVRRRRTGLMADRSLAVVKPVWMKQAEEAKLKSEAEKDAAAKAAFEATFKGLVKSHEKRAANSDSDSDEYEDLAHKPLGPVDPSKCTAAGTGIAGGTACAPSSFSVVTKDADERRVSIGGAQIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGRPIMGSPFPVFFSAGNGNGGLLGLAPPSSFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAKALQAHAAQVQAQSAKDSTGSPDKANKEDVLKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKSAMNSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATDLAAARAAEISKKLNPDGLEIEEKETKQKSRSPSPPPERSRSKSRSPINYRRRRKSRSFSPARQSKDHRSRSPLRFHHHSRYEREWRSYRESREHSDRFRRRDSDRFIDHSSGSRRNRSRSVSPHARRSPVSPKRHTGSSSHRGRKQSRADSGSPSHCRGSRSSPKIDEKKIRNRRRSRSRSSDEKLNLFDKNDEILPEKAKHRERRRSRSVPVDEKPHRNQSSPRKVDESRPRHRKRSRSKSVDDKHHLSDRLDENRNRRSISSDDKLNPSDKNEEIVHEKSKHRERRRSRSLSVDDKPPRRRSSPRKVDESRSRHKKRSRSRSVDDKRHLSAKLDENRNRRSRHSDKRRSRSRSMENRDRAYVREDGSKHEKSKNHDTKYNRSESDEGKHHSKGKSGENRDKKSKHRDRRHSRSISSEGKHDKGGTSAHREERDFEHKRFRSKSPNAKHHGNDKYGNKDERSEHQEKTLFKSKTENHQQDEGSGHSPRNFKECESKGKTKSGSRSAEFKHHLTDGEMKTRIQMGQLEMQELMITQGGDVWKKLEVGNIKHACLGVVDLNDFTWLLTMLTT 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01050 1080 MobiDBLite consensus disorder prediction 521 546 - -
Car06g01050 1080 SMART rrm1_1 381 447 IPR000504 GO:0003723
Car06g01050 1080 MobiDBLite consensus disorder prediction 921 1018 - -
Car06g01050 1080 MobiDBLite consensus disorder prediction 834 852 - -
Car06g01050 1080 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 47 775 - -
Car06g01050 1080 MobiDBLite consensus disorder prediction 859 913 - -
Car06g01050 1080 Gene3D - 341 462 IPR012677 -
Car06g01050 1080 ProSiteProfiles Filamin/ABP280 repeat profile. 115 219 IPR017868 -
Car06g01050 1080 Pfam Filamin/ABP280 repeat 117 215 IPR017868 -
Car06g01050 1080 CDD RRM_SF 382 447 - -
Car06g01050 1080 MobiDBLite consensus disorder prediction 686 738 - -
Car06g01050 1080 Coils Coil 60 80 - -
Car06g01050 1080 MobiDBLite consensus disorder prediction 93 115 - -
Car06g01050 1080 MobiDBLite consensus disorder prediction 521 584 - -
Car06g01050 1080 SUPERFAMILY E set domains 117 217 IPR014756 -
Car06g01050 1080 MobiDBLite consensus disorder prediction 752 820 - -
Car06g01050 1080 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 47 775 - -
Car06g01050 1080 Gene3D Immunoglobulins 117 223 IPR013783 -
Car06g01050 1080 SUPERFAMILY RNA-binding domain, RBD 366 459 IPR035979 GO:0003676
Car06g01050 1080 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 444 IPR000504 GO:0003723
Car06g01050 1080 MobiDBLite consensus disorder prediction 93 119 - -
Car06g01050 1080 SMART flmn_3 119 222 IPR001298 GO:0005515
Car06g01050 1080 MobiDBLite consensus disorder prediction 615 1018 - -
Car06g01050 1080 ProSiteProfiles Zinc finger C3H1-type profile. 289 310 IPR000571 GO:0046872
Car06g01050 1080 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 451 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01050 Car-Chr6 10182330 10191111 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01050 367 450 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 6.48e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01050 - - cam:101491057 1612.43