Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01034 ATGGCAGGGGTTTCGCTCCAGTGCGGCGATTGTGGTGCTCTGTTGAAATCGGTAGAAGAAGCTCAAGAACACGCTGAGCTCACCTCACACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCGTCTGCACCACTTGCTCCAAACCATGCCGATCCAAAACCGAGAGTGATTTACACACCAAGAGAACTGGGCACACTGAGTTTGTTGATAAGACTTCCGAAGCAGCAAAACCAATAAGTTTAGAGGTTCCTAAGGGTGATTCAGAATCTCAAGAGGGTGGAACCACTGACCAAAATGAAGAAATGGTTGTTCCTGAAGTTGACAAAAATCTGCTTGAGGAACTTGAATCGATGGGCTTTTCAACAGCGAGGGCAACAAGAGCGCTTCATTTTTCTGGTAATGCTAGTCTTGAGGCTGCTGTAACTTGGATAGAAAACCATGAGGATAGACCTGACATAGATGAGATGCCCTTGGTACCTGCTGTCAGTAAAGCTAAGGCTACTAAAGCCTCTCTTACCCCAGAAGAAACAAATGCCATACTACGGGATCTAAGGGAGAAGGCTCGCaagaagaaagaagaagaagagaagagaatggagagagaaagagaaaagGAGAGAATTCGAGTTGGCAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGAGAATGAAAGAAAACGGTTGTTAGCTTTGAGAAAAGCAGAAAAAGAGGAAGAGAAAAGGGCTAGAGAAAAAATCAAGCAAAAGTTGGAAGAAGACAAGGCGGAAAGAAGGCGAAAACTTGGATTGCCTCCAGAAGAGCCTTCAGCACCCAAACCTTCAGCTGTTGTAGAGGAGAAAAAGAGTTTCCTGCCAATTAGGCCTGCCACAAAAACCGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTGAAGAGAGCATTTCAAACTCTTTTAACTTATGTAGGGAATGTTGCCAGAAATCCCGATGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACCCAGCTTTTCAGGAAAGAGTTGGTGCTTTGAAAGGAGGCATTGAATTCCTCGAAATCTGTGGGTTTGAGAAGATCGACAGTGGTGAGGTTTTGTTTTTGCCTAGGAACAAGGTTGAGATACCAGTCCTGAATTCAGCTGGATCAGAACTAGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1227 0.4311 MAGVSLQCGDCGALLKSVEEAQEHAELTSHSNFSESTEPVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEVPKGDSESQEGGTTDQNEEMVVPEVDKNLLEELESMGFSTARATRALHFSGNASLEAAVTWIENHEDRPDIDEMPLVPAVSKAKATKASLTPEETNAILRDLREKARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEENERKRLLALRKAEKEEEKRAREKIKQKLEEDKAERRRKLGLPPEEPSAPKPSAVVEEKKSFLPIRPATKTEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNPAFQERVGALKGGIEFLEICGFEKIDSGEVLFLPRNKVEIPVLNSAGSELDSAIKNPFFGVL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01034 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 108 149 IPR015940 -
Car06g01034 408 SMART PGNneu 318 381 - -
Car06g01034 408 MobiDBLite consensus disorder prediction 237 268 - -
Car06g01034 408 Coils Coil 214 259 - -
Car06g01034 408 Coils Coil 180 211 - -
Car06g01034 408 PANTHER F13M7.16 PROTEIN 1 408 - -
Car06g01034 408 SUPERFAMILY UBA-like 88 162 IPR009060 GO:0005515
Car06g01034 408 Gene3D - 291 398 - -
Car06g01034 408 SMART uba_6 110 148 IPR015940 -
Car06g01034 408 MobiDBLite consensus disorder prediction 237 282 - -
Car06g01034 408 Pfam PUB domain 315 385 IPR018997 -
Car06g01034 408 CDD UBA_PUB_plant 108 156 - -
Car06g01034 408 Gene3D - 86 164 - -
Car06g01034 408 MobiDBLite consensus disorder prediction 187 208 - -
Car06g01034 408 CDD PUB_UBA_plant 302 408 - -
Car06g01034 408 Pfam UBA/TS-N domain 114 146 IPR015940 -
Car06g01034 408 PANTHER F13M7.16 PROTEIN 1 408 - -
Car06g01034 408 MobiDBLite consensus disorder prediction 74 103 - -
Car06g01034 408 SUPERFAMILY PUG domain-like 290 404 IPR036339 -
Car06g01034 408 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01034 Car-Chr6 10048350 10054927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01034 96 408 C2H2 Transcription Factor Family AT1G04850 75.949 1.14e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01034 K24348 - gmx:100794687 595.504