Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01025 ATGGCTAGACGAATGGTTGCATTCAGCACTGAACCACGTGGAATATTGGGGATTAATGTGTTGCTTAATGTTACCACATCAATTGTACTAGAAGAAGAAAATTTAATGGAGCAATATCATCGTCGTGATTATAATATTAATGGTCAACAAAATGTGGGTTCCTTAAAGATATCTGAAGTTGATCAACCTCTTTCTTGTGATTCTAAAGATCCATGTTCAATTTGTTTGGAGGAGTACGGTAATGGGTCAAATTTAGAACTCGTTTATACAAAATGTTTACATGTTTTTCATAAGGAGTGTCTTGACAAGTGGGTTAGTCAATTATGCACCAATCAATCGTCTTCTTATTCTTGTCCATTGTGTCGATCTAAGATAATATGA 381 0.3465 MARRMVAFSTEPRGILGINVLLNVTTSIVLEEENLMEQYHRRDYNINGQQNVGSLKISEVDQPLSCDSKDPCSICLEEYGNGSNLELVYTKCLHVFHKECLDKWVSQLCTNQSSSYSCPLCRSKII 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01025 126 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 28 126 - -
Car06g01025 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 126 IPR013083 -
Car06g01025 126 ProSiteProfiles Zinc finger RING-type profile. 72 122 IPR001841 -
Car06g01025 126 Pfam Ring finger domain 72 122 IPR001841 -
Car06g01025 126 SUPERFAMILY RING/U-box 71 125 - -
Car06g01025 126 SMART ring_2 72 121 IPR001841 -
Car06g01025 126 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01025 Car-Chr6 9965523 9965903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01025 72 126 C3H Transcription Factor Family AT4G00305 36.364 5.39e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01025 K15694 - cam:101489650 210.305