Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g01001 ATGGATATGGAATATGAAAACAAAAAATGCAACCAGGAGGACAAACACAAAGCGAAACTCAAGATGAAGAAGAGTGGGTCCAAATTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATAAAAGACACATCGAAGAATATTAGGATGTGGCTTGGTACCTATAAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGTCTCCTTAGAGGTTCAAACACTCGCACCAACTTCTCCACTACTCATTCCACTCCTACCAATTCTCCTATTTCTCTCAAACTCAAAAGCCTCATTAATCGTAAATCCATCAaaagtcaaagtcaaagtcaaagtcaaCCCACTATGATGAGTAGTCCAAATGTTAATAGTATCATTGATAATAACATCATGGTCGTGGAAAATAACTCTTCATGTAATAGTGAAGATTCAAAGTCTTTGTTTTGGATTCAGAACCAAGTCTCTGAATATAACCCTTTTGGGGTAGATATGAATATGATAAACTCCTCATTAGGTATTACACCGAATACATTGCAGATTGACTATTCTTGGCCATTGCCACAACAAAAGATCAACGAGTTAACAACACCAAAAGATAATATGAATATATATGGCATCAATGAGTGCTATGTGGAGGATATATACGAGTCTAAGTATGAATTTGATGTCAACTATCCTCTGTCTCAATTATTCTGTTTCACTTGA 720 0.3625 MDMEYENKKCNQEDKHKAKLKMKKSGSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSTTHSTPTNSPISLKLKSLINRKSIKSQSQSQSQPTMMSSPNVNSIIDNNIMVVENNSSCNSEDSKSLFWIQNQVSEYNPFGVDMNMINSSLGITPNTLQIDYSWPLPQQKINELTTPKDNMNIYGINECYVEDIYESKYEFDVNYPLSQLFCFT 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g01001 239 SUPERFAMILY DNA-binding domain 27 86 IPR016177 GO:0003677
Car06g01001 239 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 16 223 - -
Car06g01001 239 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 CDD AP2 27 84 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Car06g01001 239 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Car06g01001 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g01001 Car-Chr6 9758245 9759044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g01001 15 191 AP2-EREBP Transcription Factor Family AT5G19790 47.486 5.27e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g01001 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g01001 K09286 - gmx:100803832 248.825