LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car06g00987	ATGGAGAAGAACAACTCATTCAATAAAAAAGATAACCCAAATCTTCTATTGGGTCGTTTCGAGTTAGGAAAACTCCTCGGCCATGGAACCTTCGCTAAAGTCCACCTCGCCAAAAACATCAAAACAGATGAATCTGTTGCAATCAAAATCATAAACAAAGAAAAAATCCTAAAGGTCGGTTTAGTTTCACATATCAAACGAGAAATCTCCATTCTCCGCCGTGTTCGCCACCCCAACATCGTTCAACTCTTCGAAGTTATGGCTACGAAGACAAAGATCTACTTTGTCATGGAGTATGTGCGAGGTGGCGAGCTTTTCAACAAGGTTGCTAAAGGTAGGTTGAAAGAACAAGTTGCAAGGAAGTATTTTCAGCAATTAATCTGTGCCGTTGATTTTTGTCATGCTAGAGGTGTTTTTCATAGAGATCTAAAACCTGAAAATTTGTTGCTTGATGAAAATGGTAACCTTAAAGTTTCAGATTTTGGACTTAGTGCTGTGTCTGATCAAATTAGGCAAGATGGGTTGTTTCACACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGGGTAGAAAAGGTTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTCTTATGGCTGGTTATTTACCTTTTCATGATGGTAATGTTATGGCTATGTATAAGAAGATTTATAAAGGTGAATTTAGGTGTCCAAGATGGTTTTCACCTGAATTAACTACCCTTTTAACTAGGCTTCTTGATATCAAACCGAAAACAAGGATTTCTATTCCAGAGATTATGGAGAATAGTTGGTTTAAGATAGGTTTTAAGCATATAAAGTTTTATGTTGAGGATGATGTTGTTTGTAACTTTGACGATTCTCTTGATTTTGATGATGATAAGATAGTTAATATTGATGATAATAGTCGTGTAAATGTTGGCGATGAagaaacattattagcatcggtatcagaatcagaatcggaGGATTTTGAGGTTGTGAATAGAAGGAGGAATCGTGGTTCGTTGCCTAGGCCTGCAAGTTTGAATGCTTTTGACATTATATCGTTTTCGCAAGGTTTTGATCTTTCTGGGTTGTTTGAGGAAAAGGGCGACGAGGCGAGGTTTGTGTCGGGTGCATCGGTGTCAAAGATTATGTCAAAATTGGAGGAGGTTGCCCAATTGGTTAGGTTCAATGTGAGGAAGAAAGATTGCAAGGTTAGCTTGGAGGGTTCTAGAGAAGGGGTAAAAGGGCCATTGACTATTGCTGCTGAGGTATTTGAGTTGACACCTTCTTTGGTGGTTGTGGAAGTGAAGAAAAAAGGAGGAGATAAGGTTGAGTATGATAGATTTTTAAACTCTGAATTGAAACCTGCTTTGCATAGTTTAATTGTGGAGGAATCTGGTGGTTCTTCATGTCAAACTACAGCAGCTGAAGCTTTGCAACAACGTGCATTTTCTGACTCTGCCCTTGATAAACATTCAGATAGTATTGAATCTTTAGACTGA	1515	0.3749	MEKNNSFNKKDNPNLLLGRFELGKLLGHGTFAKVHLAKNIKTDESVAIKIINKEKILKVGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEQVARKYFQQLICAVDFCHARGVFHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLGRKGYDGAKVDIWSCGVVLFVLMAGYLPFHDGNVMAMYKKIYKGEFRCPRWFSPELTTLLTRLLDIKPKTRISIPEIMENSWFKIGFKHIKFYVEDDVVCNFDDSLDFDDDKIVNIDDNSRVNVGDEETLLASVSESESEDFEVVNRRRNRGSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSGASVSKIMSKLEEVAQLVRFNVRKKDCKVSLEGSREGVKGPLTIAAEVFELTPSLVVVEVKKKGGDKVEYDRFLNSELKPALHSLIVEESGGSSCQTTAAEALQQRAFSDSALDKHSDSIESLD	504

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Car06g00987	504	PANTHER	-	14	469	-	-
Car06g00987	504	Gene3D	Transferase(Phosphotransferase) domain 1	10	341	-	-
Car06g00987	504	ProSitePatterns	Protein kinases ATP-binding region signature.	26	49	IPR017441	GO:0005524
Car06g00987	504	Pfam	NAF domain	348	404	IPR004041	GO:0007165
Car06g00987	504	ProSiteProfiles	Protein kinase domain profile.	20	274	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Car06g00987	504	Gene3D	Kinase associated domain 1, KA1	348	468	-	-
Car06g00987	504	Pfam	Protein kinase domain	21	274	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Car06g00987	504	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	138	150	IPR008271	GO:0004672\|GO:0006468
Car06g00987	504	SUPERFAMILY	Protein kinase-like (PK-like)	16	275	IPR011009	-
Car06g00987	504	CDD	CIPK_C	352	462	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car06g00987	Car-Chr6	9609964	9611560	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car06g00987	15	491	CBL-interacting serine-threonine protein kinases	AT4G18700	74.004	0.0	722

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Car06g00987		Pkinase	1.5e-74	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car06g00987	-		-	gmx:100807567	736.487

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