Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00979 ATGGATGAGGCTACAAGTAAAGGTAGTGGTGAGATGTTGGATCATGTTGATAAAGGGGTTTATGAGAATTTGAACCATTTGGTTGAAGGAGCTGCAACTGATGTGGGAACTAGACATAGCTTGGGTGATAGGGTTGGTTTATGTGGTGAAGATGGTACTTCAGAAGAGATGTGCAATGATCTTGGATTCAATGAGGAGCTAAAGGAGAGAGTTTTAGAAGTTAAGGGTCGGAACATTGGTGGTGATCCACAAAAAATCAATGATGAATTGCACGGCCCTGATCAAGGGTCGAGTTATAATTCAAGTAATTTGGCTAATGAGGAAACACTTGAGACATGTGTTGTAATAGATTCTTCAGCTCATGTTGTGTGTCTCAATGGAGATAATAGAAAATTGGTAGCTAAAACTAATGAATCGGGGTTGAGCAAGTTATCGATTAAGGCACCGAAAGGGCTGTCTGAGATAGATAAAAATTCATGTGTGATTGATATGAACTGCGGTGACTGCAAAGATTTTAGCGAGAATTTGGATGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGACAACCGTTTGAAGCAACTGCTGTTGGCACTCCAAATAATGATAATAATAGTACAAGTTTGATTGTGCTTGGTTGTGCATGTAAAGATGAGTTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTCTTGTGAAATATGCGGAGAGACTGCAAAAAATGTTTCCGATGTAACTGATGATGGATTTATGGAAGAATGGAATGAAAGTGAATTCATCGACAATAATAGTACATCACCGCGCAGGTTGGTTGGATGCTGGCACGGGCAGCCATTCTGTAACTTCTTGATGGCGTGCCTGGTGATAGCTTTTGTTCTGCCATGGTTCTTTCATCTAAGGCTGTTCTAA 936 0.4092 MDEATSKGSGEMLDHVDKGVYENLNHLVEGAATDVGTRHSLGDRVGLCGEDGTSEEMCNDLGFNEELKERVLEVKGRNIGGDPQKINDELHGPDQGSSYNSSNLANEETLETCVVIDSSAHVVCLNGDNRKLVAKTNESGLSKLSIKAPKGLSEIDKNSCVIDMNCGDCKDFSENLDGEMICRICHLASGQPFEATAVGTPNNDNNSTSLIVLGCACKDELGIAHSHCAEAWFKIKGNRSCEICGETAKNVSDVTDDGFMEEWNESEFIDNNSTSPRRLVGCWHGQPFCNFLMACLVIAFVLPWFFHLRLF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00979 311 PANTHER ZINC FINGER, RING-CH-TYPE 1 311 - -
Car06g00979 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 256 IPR013083 -
Car06g00979 311 MobiDBLite consensus disorder prediction 78 100 - -
Car06g00979 311 Pfam RING-variant domain 206 244 IPR011016 GO:0008270
Car06g00979 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 311 - -
Car06g00979 311 SUPERFAMILY RING/U-box 179 247 - -
Car06g00979 311 ProSiteProfiles Zinc finger RING-CH-type profile. 174 251 IPR011016 GO:0008270
Car06g00979 311 SMART ringv_2 181 245 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00979 Car-Chr6 9525587 9528175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00979 162 310 C3H Transcription Factor Family AT5G05830 37.888 4.96e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00979 - - gmx:100791129 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00979 06 9525587 9528175 Car06g00979 06 9525587 9528175 ECH
Car06g00979 06 9525587 9528175 Car01g00429 01 3370335 3373373 PCT