Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00957 ATGGATGAAGCACATGGAAGTTCAAGTTCCTTGCCTCCTTTTCTAGCAAAGACTTATGAGATGGTGGATGATTCTTCCTCGGATCCTATCGTTTCGTGGAGTTTGAATGACAAAAGTTTCGTCGTGTGGGATCCAGCTGAATTCGCAAGGATTTTGCTTCCTAGATTCTTTAAGCACAATAACTTTTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGAAAAGTTGATCCGGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGGAAACCACATCTTATGAAGAATATCCATAGACGTAAGCCGGTTCATAGCCATTCGTTGCAGAATCTTCAAGCACAAGCCCCTCTATCGGAGTCTGAAAGGCAAAGTTTGAACGACGAAATAGAGAAGCTGAAACACGATAAAGAACAACTCATGATGGAGTTGAAGAGACACCAACTTGAGTGGCAAACATATGAGATTCAAATACATTGCACAAAAGACCGGTTGGAAAAATTGGAACAAAAGCAACAGAAATTTGTGTCTTCTGTTTCTCAAGTATTGCAGAAACCGGTGATGATTGCTGTAAATCTCTTGCCACTGACAGAAACCATGGATAGAAAACGTAGGTTGCCGAGAAGTGGCTGCTTTAACAATGAAGCTATTATGGAAGATGGTATTGAAACTTCTGTAGGTTTGCCCAGAGATAATGCAGAGGGTACCTCTCTTTTGACATTAAATGCAGAGAGATTGGATCAGCTTGAGTCATCCATGGTATTTTGGGAGACTATTGCGCATGAAGCTGGTGACAACTTTGTTCATGCTCGTTCAAACATTGATTTAGATGAATCTACATGCTGTGCTGATAGTTTGTCTATATCTTCTGGGCAACTAGATGTTGAAGTTCAACCTAAGTCATCTGGAATTGACATGAATTCTGAGCCAACTGCTGCTCCTGCTGTTGTTGCATTAAAAGAACAACCTGTGGGAATCACCACTGCAGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCGGAAGCACATGAAGTGCAATCAGAAAGAAAGGATTCTAATAGCAGAAAAAATGAAGGAAAACCTAGTGATCACGGCAAATTTTGGTGGAACATGCGGAAAGCAAATAATCTTCCTGAACAGATGGGGCGTGTTGATCAAGTAGAGAAAATTTAG 1206 0.4071 MDEAHGSSSSLPPFLAKTYEMVDDSSSDPIVSWSLNDKSFVVWDPAEFARILLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFSNDDFVRGKPHLMKNIHRRKPVHSHSLQNLQAQAPLSESERQSLNDEIEKLKHDKEQLMMELKRHQLEWQTYEIQIHCTKDRLEKLEQKQQKFVSSVSQVLQKPVMIAVNLLPLTETMDRKRRLPRSGCFNNEAIMEDGIETSVGLPRDNAEGTSLLTLNAERLDQLESSMVFWETIAHEAGDNFVHARSNIDLDESTCCADSLSISSGQLDVEVQPKSSGIDMNSEPTAAPAVVALKEQPVGITTAATGVNDVFWEQFLTEDPGASEAHEVQSERKDSNSRKNEGKPSDHGKFWWNMRKANNLPEQMGRVDQVEKI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00957 401 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car06g00957 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 382 IPR027725 -
Car06g00957 401 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Car06g00957 401 Coils Coil 111 173 - -
Car06g00957 401 MobiDBLite consensus disorder prediction 348 401 - -
Car06g00957 401 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 382 - -
Car06g00957 401 MobiDBLite consensus disorder prediction 352 378 - -
Car06g00957 401 Gene3D - 6 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00957 Car-Chr6 9353978 9356213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00957 1 400 HSF AT4G18880 50.847 1.61e-114 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car06g00957 HSF_DNA-bind 4.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00957 K09419 - gmx:100798004 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00957 06 9353978 9356213 Car06g00957 06 9353978 9356213 ECH
Car01g00448 01 3523132 3525740 Car06g00957 06 9353978 9356213 ECH
Car06g00957 06 9353978 9356213 Car01g00448 01 3523132 3525740 PCT