Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00953 ATGGCTAATAATAATTCAGCAAGAATTGAAACTCTTGATGTTGTTTTAGATGTAAACAAGGACTCCTCCAGAACATGTGAAGGCTCTGACTCCTATGTCTCTGTCCCTTTCTTGCAGAAGTTAATAGCAGAGATGGTGGGAACATATTTCTTGATATTTGCAGGATGTGCTTCTGTAGTGGTGAACAATAACAAAGACAACGTTGTAACACTTCCTGGGATTGCAATTGTTTGGGGACTCACTCTTATGGTACTTGTTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTCACCCTTGCTTTCGCTTCAACAAGGAGATTTCCTTTAGTACAGGTACCAGCTTATTTATCAGCTCAGGTCTTGGGAGCTACACTTGGTAGTGGAACTTTGAAACTAATATTCAGTGGCAGCCATGATCAGTTTACAGGAACACTTCCAACTGGATCTAATTTTCAAGCTTTTGTACTTGAATTTATAATCACTTTTTTCCTTATGTTTGTCATTTCTGGTGTGGCCACCGATAACAGAGCGATTGGTGAATTAGCTGGAATTGCAATTGGATCTACATTATTACTTAATGCGATAATTGCAGCACCAATAACAGGAGCATCAATGAATCCAGCTAGAAGTTTAGGACCTGCATTTGTACACAATAAATACAGAGGAATATGGATATATTTGGTGTCACCGATTTTAGGAGCGGTGGCCGGAGCATGGGTGTACAACACTGTGAGGTACACTAACAAGCCATTGCGTGAGATCACGAAGAGTGCATCCTTCCTGAGAGAAGCAGGGCGTGGTGGACAACAAATAATCTAA 831 0.4079 MANNNSARIETLDVVLDVNKDSSRTCEGSDSYVSVPFLQKLIAEMVGTYFLIFAGCASVVVNNNKDNVVTLPGIAIVWGLTLMVLVYSLGHISGAHFNPAVTLAFASTRRFPLVQVPAYLSAQVLGATLGSGTLKLIFSGSHDQFTGTLPTGSNFQAFVLEFIITFFLMFVISGVATDNRAIGELAGIAIGSTLLLNAIIAAPITGASMNPARSLGPAFVHNKYRGIWIYLVSPILGAVAGAWVYNTVRYTNKPLREITKSASFLREAGRGGQQII 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00953 276 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Car06g00953 276 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PANTHER AQUAPORIN NIP2-1 3 270 IPR034294 -
Car06g00953 276 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Car06g00953 276 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 SUPERFAMILY Aquaporin-like 33 259 IPR023271 -
Car06g00953 276 Pfam Major intrinsic protein 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00953 276 PANTHER NODULIN-26 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00953 Car-Chr6 9326973 9329131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00953 3 266 Major Intrinsic Protein MIP AT5G37810 54.815 3.36e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00953 K09874 - gmx:100813448 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00953 06 9326973 9329131 Car06g00953 06 9326973 9329131 ECH
Car06g00953 06 9326973 9329131 Car01g00455 01 3575111 3577343 PCT