Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00952 ATGGATGACAATTCAGCTAGCAATGGAACAATCAATGAGGTCGTTTTAAACGTAAACAAGGATGACTTAAAGATAACTGAAAACTCAACCGCCCCTGCCACTGCTTCTTTCTTGCAAAAGTTGGTAGCTGAAGTGGTAGGCACCTATTTCTTGATATTTGCTGGTTGTGCTTCAGTGGTGGTGAACAAGAACAATGAAAATGTTGTAACACTTCCTGGGATTTCAATTGTTTGGGGACTTGCTGTCATGGTCTTGGTTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACAATTGCTTTTGCCACCACCAGAAGATTTCCCCTCAAACAGGTACCAGGCTATGTAGTAGCTCAAGTCCTTGGATCGACACTTGCAAGTGGAACTCTTAGATTACTATTTAGTGGGAAGGATAACCAATTTGCAGGAACACTCCCAGATGGATCTAACTTGCAAGCTTTTGTTGTTGAATTCATAATCACTTTTTATCTTATGTTTATCATATCTGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCTGGAATTGCCGTTGGGTCTACTGTACTTTTGAATGTGATGTTTGCAGGGCCAATAACAGGGGCATCAATGAATCCAGCAAGAAGCATAGGACCTGCATTTGTACACATGGAATATAATGGAATATGGATATATTTGGTGTCTCCAATTCTAGGGGCTGTGGCTGGTGCATGGGTTTATAACATCATTCGATATACGGATAAGTCGGTTCGTGAGATCACCAAAAGTGCATCTTTCCTCAAAGGAGTAAAGCCATAG 813 0.4145 MDDNSASNGTINEVVLNVNKDDLKITENSTAPATASFLQKLVAEVVGTYFLIFAGCASVVVNKNNENVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPLKQVPGYVVAQVLGSTLASGTLRLLFSGKDNQFAGTLPDGSNLQAFVVEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHMEYNGIWIYLVSPILGAVAGAWVYNIIRYTDKSVREITKSASFLKGVKP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00952 270 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
Car06g00952 270 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Car06g00952 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 SUPERFAMILY Aquaporin-like 35 258 IPR023271 -
Car06g00952 270 TIGRFAM MIP: MIP family channel proteins 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 269 - -
Car06g00952 270 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Car06g00952 270 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car06g00952 270 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00952 Car-Chr6 9317772 9319740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00952 4 270 Major Intrinsic Protein MIP AT5G37810 55.311 3.72e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00952 K09874 - gmx:100798526 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00952 06 9317772 9319740 Car01g00457 01 3584307 3586675 PCT