Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00946 ATGATGCCAGATTCTCCACAGAGAAAGattggaagagggaagattgagatcaagaggattgagaacacaacgaatcgacaagttactttctgtaagcgtagaaatggcttgcttaagaaggcatatgaattatctgttctttgtgatgctgaagttgctctaatagttttctcaactcgtggacgtctctatgaatATGCAAATAACAGTGTCAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTTGCAAATCTGCTTCTGAGACTAATGCTCAGTATTACCAGCAGGAAGCTGCCAAACTGCGGGTGCAAATCAGTAATTTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAGTGGCAAGGATCTCAGAAACCTTGAGACTAAATTGGAAAAAGGAATTAGCAGAATTCGTTCTAAGAAGAATGAAATGCTGTTTGCAGAAATTGAGTATATGCAGAAGAAGGAGATAGAATTGCATAATAGCAACCAGGTTCTTAGAGCAAAGatatCAGAAAGTGAGAGGAGCCAGCATAATGTTAATGTGTTGTCTGGAGGCACAAACTTTGAATGTATGCAAACGCCACAGCAGTTTGACCCTCGCAACTACTTCCAAGTGACTGGATTACAACCCAATAATAATCAGTATGCCAGTTGA 687 0.3042 MMPDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGCKSASETNAQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMSGKDLRNLETKLEKGISRIRSKKNEMLFAEIEYMQKKEIELHNSNQVLRAKISESERSQHNVNVLSGGTNFECMQTPQQFDPRNYFQVTGLQPNNNQYAS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00946 228 Coils Coil 96 123 - -
Car06g00946 228 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g00946 228 Pfam K-box region 92 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car06g00946 228 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Car06g00946 228 CDD MADS_MEF2_like 11 85 IPR033896 GO:0000977|GO:0045944
Car06g00946 228 Gene3D - 22 94 IPR036879 GO:0003677|GO:0046983
Car06g00946 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Car06g00946 228 Coils Coil 133 153 - -
Car06g00946 228 PANTHER AGAMOUSB 6 227 - -
Car06g00946 228 PANTHER MADS BOX PROTEIN 6 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00946 Car-Chr6 9259072 9267287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00946 8 222 MADS-box Gene Family AT3G58780 64.706 1.32e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car06g00946 K-box 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00946 K09264 - gmx:100776263 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00946 06 9259072 9267287 Car06g00946 06 9259072 9267287 ECH
Car06g00946 06 9259072 9267287 Car01g00467 01 3643779 3652045 PCT