Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00941 ATGCCTCGTAAAGTAAACTATGAAATTGATTACTACGCCGatgactatgaggaatatgacgactatgattatgattttgaAACTGAAAACTACGGAGCAGGAAAAGGACCTGATACAAAGCAAGAGACCATCAGGCCTGGAATTTGGCAATGCTCCATTTGCACCTACGACAACGATGAGAGTATGACTTCGTGTGATATCTGCGGCGTTATACGTCATCCCTTGGTTAACAAGGGTACTTCCAACAGTAACAAAACAGTTGAAGATATAAGCAAAAATCCTGGAGCATCCCAGTTGGCCAGGTCTCTTTTCCAATCATTACCACAACAGATTCCGAAAGAGGTTGTATTATTTCCAATGCAGGATGTTGGTTTTTGGACAGATGGCAGTAACATCTACAAGCTTGAGAATGTACAAGGAGAATTTCATGAAATTCATAAAGCTTTTAATACTCAAAGCCATCCCTCTTTAAATATAGACCCTTTCAAGTTTGACGTTCCATCCCCAGATGatgtggtttatactggcctacattcttcaaaaatgggtttgaaagACAAAGTTAAAAACTCTAAAGATTCGCGGCTTTCATCGAGCAGCAGAGACAAGAATGAACTTGCCGTAGAATCCAATGCTGAAAGTTCAGACAACGTATCATCCTTAATGCAAAAGAACAAGCAGGGTAGTGCAGCCAAGAACAAGCTTTCCAAAAATGTAGACATTGATTTGGAAATAATTGGCAAAACTTTAAACAACTTGTCAGCATCTTTGCCAAAGGATAAAGGGGACAATGCGAATAAAATAAATTCTTCAAAGAATGGTACAAATGGTATTCAATCAAGCAAAGAAAAGTCCGGTACTTTGTCTGCACTGCCAAAAGTCGAAGAAAGTGATAAGCTTATTTTGTCTTCTATGAAAGATAGAAAGTCTGAAAGTGGTTCCAGCAGTTTTAACCACATGGTTCTTGATATAAGTTCTGGAAATTCTGATAATACTAATGCTAAGGGACCTCATCAACAAGTTTCTTACAAGCCAGAAAAGTGGATGATCCCTCAACATTCTGAAGAGACATTGACTCAGTTGAATCTTGCTATTGTTGGTCATGTTGATTCTGGAAAATCAACCTTATCCGGTAGGCTATTACACTTATTGGGACGAATTTCCAAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTCGCTTACGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTGGCTGTGGCATATTTTGACACTAAGAAATATCATGTTGTTGTACTTGACTCTCCTGGCCATAAAGATTTTATCCCAAACATGATTTCTGGAGCAACACAAGCTGATGCTGCAATTCTTGTCATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGTAGCAAAGGACAAACAAGGGAACATGCACAACTTATTAGAAGTTTTGGTGTAGACCAGGTTCTTGTTGCTGTAAATAAGATGGATGTTGTGGCATACTCCAAAGACCGATTTGATTTTATTAGACATCAGCTAGGAACTTTTCTCCACTCATGTGGGTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCAGATGCTCATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAATCGACTCACTACAACCTCCTACAAGAGAATTCTCAAAACCTTTGCTAATGCCAATATGTGATGTCATCAAATCAACTGCACAAGGGAATGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACTAAGGTCTTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGTACACTGGAGCGTGACTCTAATGCATGCTCGGTTGCTAGAGCTGGAGATAATGTAGCTGTTACATTGCAAGGTGTTGATGGAAGTCATGTAACGGCAGGAGGCGTATTATGCCATCCTGACTTTCCTgttgcagttgcaaagcatttggagttgaaattgcTTGTCTTGGATGGTGCAAGTCCCATATTGGTCGGCGCTCAGTTAGAGTTTCATATACATCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAATACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGTTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTGTGTGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGAACATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATAATCGAAGAACAAGATTAG 2370 0.3835 MPRKVNYEIDYYADDYEEYDDYDYDFETENYGAGKGPDTKQETIRPGIWQCSICTYDNDESMTSCDICGVIRHPLVNKGTSNSNKTVEDISKNPGASQLARSLFQSLPQQIPKEVVLFPMQDVGFWTDGSNIYKLENVQGEFHEIHKAFNTQSHPSLNIDPFKFDVPSPDDVVYTGLHSSKMGLKDKVKNSKDSRLSSSSRDKNELAVESNAESSDNVSSLMQKNKQGSAAKNKLSKNVDIDLEIIGKTLNNLSASLPKDKGDNANKINSSKNGTNGIQSSKEKSGTLSALPKVEESDKLILSSMKDRKSESGSSSFNHMVLDISSGNSDNTNAKGPHQQVSYKPEKWMIPQHSEETLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDQVLVAVNKMDVVAYSKDRFDFIRHQLGTFLHSCGFKDSSLSWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAIDSLQPPTREFSKPLLMPICDVIKSTAQGNVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLQGVDGSHVTAGGVLCHPDFPVAVAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSRILSILDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRTLGRTIAVGLVTRIIEEQD 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00941 789 Gene3D Translation factors 586 675 - -
Car06g00941 789 PANTHER OS04G0595300 PROTEIN 51 787 - -
Car06g00941 789 Pfam Elongation factor Tu C-terminal domain 680 784 IPR004160 -
Car06g00941 789 Gene3D - 42 88 - -
Car06g00941 789 MobiDBLite consensus disorder prediction 185 233 - -
Car06g00941 789 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Car06g00941 789 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Car06g00941 789 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Car06g00941 789 PRINTS GTP-binding elongation factor signature 362 375 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 PRINTS GTP-binding elongation factor signature 421 429 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 PRINTS GTP-binding elongation factor signature 441 451 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 PRINTS GTP-binding elongation factor signature 457 468 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 PRINTS GTP-binding elongation factor signature 502 511 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 Gene3D Translation factors 679 789 - -
Car06g00941 789 CDD EF1_alpha 362 581 - -
Car06g00941 789 PANTHER TRANSLATION FACTOR 51 787 - -
Car06g00941 789 MobiDBLite consensus disorder prediction 254 287 - -
Car06g00941 789 MobiDBLite consensus disorder prediction 254 292 - -
Car06g00941 789 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 681 785 IPR009001 -
Car06g00941 789 MobiDBLite consensus disorder prediction 210 233 - -
Car06g00941 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 603 IPR027417 -
Car06g00941 789 CDD HBS1_C_III 676 784 - -
Car06g00941 789 Pfam Elongation factor Tu GTP binding domain 361 577 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 358 589 IPR000795 GO:0003924|GO:0005525
Car06g00941 789 SMART zf_4 47 71 IPR001876 -
Car06g00941 789 Gene3D - 347 582 IPR027417 -
Car06g00941 789 MobiDBLite consensus disorder prediction 185 209 - -
Car06g00941 789 SUPERFAMILY Translation proteins 580 675 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00941 Car-Chr6 9218686 9229480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00941 47 84 Eukaryotic Initiation Factors Gene Family AT5G10630 57.895 1.99e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00941 K14416 - gmx:100801724 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00521 01 4182716 4185531 Car06g00941 06 9218686 9229480 PCT