Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00936 ATGCagatcttcgtgaaaaccctaacgggtaagacgatcaccctcgaggtggagtcttccgacacaatcgacaatgtcaaagcaaagatccaagacaaggaaggaattccaccagaccaacagcgtctcatcttcgccggaaagcagttggaagacggccgcactctcgccgactacaacatccagaaggaatcaactctccaCCTTGTCCTCCGTCTCCGCGGTGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCAAAGAAGATCAAGCACAAGCATAAGAAGGTGAAGCTCGCTGTTCTTCAATTCTACAAGGTTGATGATTCTGGAAAGGTGCAGAGGTTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCTGGAACTTTCATGGCGAATCATTTCGATCGTCATTACTGTGTTGATTGA 432 0.2546 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCVD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00936 143 Gene3D - 1 80 - -
Car06g00936 143 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Car06g00936 143 Pfam Ribosomal protein S27a 102 141 IPR002906 GO:0003735|GO:0005840|GO:0006412
Car06g00936 143 PRINTS Ubiquitin signature 32 52 IPR019956 -
Car06g00936 143 PRINTS Ubiquitin signature 53 74 IPR019956 -
Car06g00936 143 PRINTS Ubiquitin signature 11 31 IPR019956 -
Car06g00936 143 SMART ubq_7 1 72 IPR000626 GO:0005515
Car06g00936 143 SMART Ribosomal_S27_2 102 142 IPR002906 GO:0003735|GO:0005840|GO:0006412
Car06g00936 143 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Car06g00936 143 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Car06g00936 143 CDD Ubl_ubiquitin 1 76 - -
Car06g00936 143 PANTHER UBIQUITIN 1 141 - -
Car06g00936 143 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Car06g00936 143 Gene3D - 81 143 IPR038582 -
Car06g00936 143 SUPERFAMILY Zn-binding ribosomal proteins 100 141 IPR011332 GO:0006412
Car06g00936 143 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00936 Car-Chr6 9180621 9182010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00936 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 97.163 2.75e-100 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00936 K02977 - csv:101218512 252.292