Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00881 ATGGCGAAAAAGGGTCCATGCTCGCATTGCGGAATAGTCTCTGCTCCACATTGGCGTCAAGGACCAGAAGAGAAGCCAGTGTTGTGCAATGCATGTGGAATAAGATTTAAACATTGGGGAAACCTTCATAACTATACTCCAAAACATTGTGTGCCAAATAACCTTAATAATCACAAACTTGTGAAAGATAACGGAAATACTTCAAGCAATGTTCCAGATGAGGATTCAGATAATGGTGGAAAAAATTCATCAAATTCATGGATATATTCAAAGAGACGTTCACAAAAGGGATATAAGAAGATGACACCAATCCAGAAGTTTCAAAAACAACTTTTTGATGAGTGGAGATATCATGGGAAAGCAAAAGAGGAAGATGTTTTATTGTTCCAAAACATGAACAACTTCATACCTTCAAATGAAATTGGCCTTGGAGCAATTCTTCTTAAGCCAACAGAAGATGCTAGTTCTACATCTCGTTGA 480 0.375 MAKKGPCSHCGIVSAPHWRQGPEEKPVLCNACGIRFKHWGNLHNYTPKHCVPNNLNNHKLVKDNGNTSSNVPDEDSDNGGKNSSNSWIYSKRRSQKGYKKMTPIQKFQKQLFDEWRYHGKAKEEDVLLFQNMNNFIPSNEIGLGAILLKPTEDASSTSR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00881 159 PANTHER OSJNBB0038F03.10 PROTEIN 13 155 IPR044589 -
Car06g00881 159 CDD ZnF_GATA 6 40 IPR000679 GO:0006355|GO:0043565
Car06g00881 159 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Car06g00881 159 MobiDBLite consensus disorder prediction 61 96 - -
Car06g00881 159 PANTHER GATA ZINC FINGER PROTEIN 13 155 - -
Car06g00881 159 Pfam GATA zinc finger 7 38 IPR000679 GO:0006355|GO:0043565
Car06g00881 159 MobiDBLite consensus disorder prediction 61 92 - -
Car06g00881 159 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Car06g00881 159 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 56 - -
Car06g00881 159 Gene3D - 2 47 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00881 Car-Chr6 8592109 8594527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00881 1 49 C2C2-Gata Transcription Factor Family AT5G47140 65.306 2.32e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car06g00881 GATA 4.7e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00881 - - cam:101493109 338.191