Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00880 ATGGATTCATCATCATCAGCAACACCACTTTGGAGGCAAGGACCAGCAGAGAAGCCAGTGTTATGCAATGCATGTGGATCAAGATACAGACATTGGGGAACACTTGATAACTATCTTCCTAAACATTCTATTGGAAAAGATCTTGTTGTTCCTCACCCCATCATCTGTACAAACAACCATCACCATCCTTCAACCGATCTTCCGGATTCAAATGATGGTGAAAGTAGTTCAAGTTTATGGGCGTCTACAATTCCTTCAAAGAAACGTACAAGGAGGGGGGTGTATAAGAGGCTAACACCAATGGAGAGGTTTCAAAAGCAACTTTTGGATGAGTTGAAACTTCAAGGGATACCAAATGAACCATCTCCAGAAGAGGTTTTATTGTTTCAAAACGTCAACAGCTTCATACCTTCAAATGAAATTGGTCTTGGAGGCATTCTTCTTGAACGAGATGGTACTTCTATTTAA 468 0.406 MDSSSSATPLWRQGPAEKPVLCNACGSRYRHWGTLDNYLPKHSIGKDLVVPHPIICTNNHHHPSTDLPDSNDGESSSSLWASTIPSKKRTRRGVYKRLTPMERFQKQLLDELKLQGIPNEPSPEEVLLFQNVNSFIPSNEIGLGGILLERDGTSI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00880 155 Gene3D - 1 97 IPR013088 GO:0006355|GO:0008270
Car06g00880 155 ProSiteProfiles GATA-type zinc finger domain profile. 1 33 IPR000679 GO:0006355|GO:0043565
Car06g00880 155 PANTHER OSJNBB0038F03.10 PROTEIN 7 45 IPR044589 -
Car06g00880 155 PANTHER OSJNBB0038F03.10 PROTEIN 68 151 IPR044589 -
Car06g00880 155 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 38 - -
Car06g00880 155 SMART GATA_3 4 44 IPR000679 GO:0006355|GO:0043565
Car06g00880 155 CDD ZnF_GATA 8 34 IPR000679 GO:0006355|GO:0043565
Car06g00880 155 MobiDBLite consensus disorder prediction 60 85 - -
Car06g00880 155 Pfam GATA zinc finger 6 34 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00880 Car-Chr6 8584254 8584802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00880 8 43 C2C2-Gata Transcription Factor Family AT4G17570 75.000 4.74e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car06g00880 GATA 7.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00880 - - mtr:MTR_8g089130 161.384