Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00875 ATGGGAGGAAGCAGACTTGCACGTCTATCGGCGTACAAGAATCTTGGCTGCTTAGCCGCTTTCACCCAACTACACTTTCTTTTCTGTCAGattattattttcttTGAGAATATTCAGAACGTGGAAACAGAACCACTTTGCTTCATTGAGCACAATAACTTACTAAAATTTTGTCAATTCATCTTTTTGTATCGAATGAAACAGATGAAATTGGATGCAGTGTATCAAGCCAATGAGGATGATCCTTTTAGGCACGGATCGAAAATGGAAAATACACCTGAATCTTCTAGCAGTCCACAACATAAAAAGATATCATCCAGATGGGATCCCGTCGAAGCATGTCGGCCTATAATTGGTGAAGCACCTGTGTTTTATCCAACTTTTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATACGTCCCTTAGCCGAACCTCATGGTATATGTAGAATTGTCCCTCCAGCTTGCTGGATTCCACCTTGTCCACTGAAGGAGAAAGACATATGGGAAAATGCTAAATTTCCGACCCGTATTCAGCAAGTTGATTTGCTTCAGAACAGGGAGCCAATGATGAAGAAAAGTCGGGGAAGGAAGCGAAAACGTAGAAAGCAGTCGAAGATGGGAGCATGTAGGAGAACTGGCAGTTCAGGTTCTGAAGCTAATGTTTCTTCTGAATCTGATAATAAGTTTGGATTCCAATCAGGGCCGGACTTCACACTTAAAGAGTTTCAGCAATATGGTAATTCTTTTAAAGAGTGTTACTTTGGGTTGAGTGATGCCAAAGATGGTAAAGGTAGTGATAATAATCGCCATGACAGATGGGAGCCATCTGTTGAGGAAATCGAAGGCGAATACTGGCGAATAATAGAGCAACCAATCGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGCGGTTTTCCTAAGACATCGTCCTTAACTAAGAGCGATTCAGATTTATATACGATGTCTGGCTGGAATCTGAATAACTTTGCGCGACTGCCGGGTTCTGCATTGTGTTTTGAAGGAAGTGACATCTCAGGCGTTTTAGTTCCATGGCTTTATGTTGGAATGTGCTTTTCCACATTTTGCTGGCATGTTGAAGATCATCACCTGTATTCGCTTAATTATCTACACTGGGGTGATCCAAAAGTATGGTATGGTGTACCTGGGAGCCATGCTTCAGCTATGGAAGATGCAATGAGGAAACATTTACCTGATTTGTTTGAAGAACAACCGAATCTACTCAATGAGTTGGTGACTCAGTTCTCTCCGTCAACACTTATGTCTGAGGGGGTGCCGGTATATCGCACTGTCCAGCATTCTGGGGAATTTGTTATCACCTTTCCAAGGGCGTACCACTGTGGCTTCAGCTGTGGCTTCAACTGTGCAGAGGCTGTAAATGCGGCTCCTTATGATTGGTTCGAGCATGGTCAGAATGCTGTCGAGATTTACAGTCAGCAGTGCCGTAAGACATCATTGTCTCATGACAAGTTGTTATTTGGATCTGCTCAGGAAGCTGTACATGCCTTTTCAGAGACAACTCTTCATGGAAAAGAAAATCTGAAATATTTAAAATGGAGAAATGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACGAGGATAACGATGGAAAAAGAGAGGCTTGACTTGCTTCCGGTTCATTTAAAGACGCTAAAGATTGACAATGACTTTGATATGGTTGAGGAAAGGGAATGCTTCTCTTGCTTCTATGACTTGCACTTATCCGCTGTCGGTTGCAACTGCTCTCCTGACAGCTATTCTTGTCTGAGACACTTCAAGTTATTTTGCTCTTGTGAAATAGATAAAAGATTAGTTCTGGTTCGTTATACTATGAACGAGCTAAGTACATTGATTGAAGCATTAGAAGGAGAACCACACGCAATAGAAGTGTGGGAAACTAGAAACGTTGGGGCGGTTTCTGCTAGTGTTGAGGATGCTTGTATGCACGAACAAGGTATAGAGAGAGCCATTTGCAAAACAAAGAATTATGAAGAAGGGAAAAGCTCAACTTCTTGTGCAGGAATTAATGAGAGGTCAAATTCAAATGCACCTAGTAGTCCTTACAGTCACATTTCTTCAGAGTTGGTCCATTCAGAGTCTCATCATGAAACTTTTGGTACACCTTATGCGGATATGAATGGCCATAAGGAAGACATGAATGATATGGAGTTGGTCATGGAGAATGAAGTTAAGGAGGATAAGATAAGTTCTTTGTATTTGAATATTGGTGATATATCTGATAAACCCGAAAATTCTTTGGTAAATATAGCTGATAGCCATCACAATAAGCGTGTTCCATATTTGGAGAAAGTCAGCTGCACTGAGACCAGAAAGGAACGAGACAACGTGGAACTTGGTGCTGGTACACTTGATGGTTGTAAATTGTTTGGCGTCGATTTGCAAATGCATTCAGATTCACAACAGCAACTCAATAGTGAGTTTGAAATGCGAGTTCTAGGCACCTCCAATACAAGTATATCTTTGACAAAAAAAAGCTCAGCACTGCAAAAGTTTAGTACTTTTGCTGAGCTCATAAGTTTGGGCTCGGTTATGTATGGAAAGAATTGGTGCAGTAAGCATGCAATTTATCCAAAAGGATTCAAGAGCCGCGTTAAGTTCGTTAACATTCTTGATCCAGCAAGCATCTGTTACTATATTTCTGAAGTCATTGATGGTGGATTTCTTGGGCCTTTTTTCAGGGTTACCATGGAAGAACATCCGAACGAGATTTTCACGCACACCTCAGCTGATAAGTGCTGGGAGACAGTTATTGATAGACTAAACTATGAAATCAATCGGCGGCAGAGTATAGGTGAATTGGAAGTACCTCCCTTGGAATTACTGCACAACATCAACGGTCATAAGATGTTTGGATTCCTTTCTCCATCCATTATTCAGTTCATTGAAGCTCAAGATCCAAGCCATCAATGTGTAGAGTATTGGAATCACAAACAAGTTATTTTTGGATCTTCTAGCAAGGCCATTGATGACTCTAAGTTAACTTGTGGTTCAAGCAATAACTCTCTAGTTGACTTCAGAACCAAAGTTTTTGGTGTCAATTTGATAAAGCAAGAGGAGGATGAAATAGGAGAAAGATCTCAATCGTTTGAAAAGACGAAATTGACTCTAGAAGGATTCTTAAAAAAGGCAAGTACTAATGAGTTACGGGCAATGCATCAGTTATTCAGCTCTGATGCACAAGTGTCACAGTGGAGAGCAACATGTATAAAGTTGATAGAGGAAATCCAATAA 3309 0.4086 MGGSRLARLSAYKNLGCLAAFTQLHFLFCQIIIFFENIQNVETEPLCFIEHNNLLKFCQFIFLYRMKQMKLDAVYQANEDDPFRHGSKMENTPESSSSPQHKKISSRWDPVEACRPIIGEAPVFYPTFEEFEDTLGYIAKIRPLAEPHGICRIVPPACWIPPCPLKEKDIWENAKFPTRIQQVDLLQNREPMMKKSRGRKRKRRKQSKMGACRRTGSSGSEANVSSESDNKFGFQSGPDFTLKEFQQYGNSFKECYFGLSDAKDGKGSDNNRHDRWEPSVEEIEGEYWRIIEQPIDEVEVYYGADLETGSLGSGFPKTSSLTKSDSDLYTMSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAMEDAMRKHLPDLFEEQPNLLNELVTQFSPSTLMSEGVPVYRTVQHSGEFVITFPRAYHCGFSCGFNCAEAVNAAPYDWFEHGQNAVEIYSQQCRKTSLSHDKLLFGSAQEAVHAFSETTLHGKENLKYLKWRNACGKDGVLTKAVKTRITMEKERLDLLPVHLKTLKIDNDFDMVEERECFSCFYDLHLSAVGCNCSPDSYSCLRHFKLFCSCEIDKRLVLVRYTMNELSTLIEALEGEPHAIEVWETRNVGAVSASVEDACMHEQGIERAICKTKNYEEGKSSTSCAGINERSNSNAPSSPYSHISSELVHSESHHETFGTPYADMNGHKEDMNDMELVMENEVKEDKISSLYLNIGDISDKPENSLVNIADSHHNKRVPYLEKVSCTETRKERDNVELGAGTLDGCKLFGVDLQMHSDSQQQLNSEFEMRVLGTSNTSISLTKKSSALQKFSTFAELISLGSVMYGKNWCSKHAIYPKGFKSRVKFVNILDPASICYYISEVIDGGFLGPFFRVTMEEHPNEIFTHTSADKCWETVIDRLNYEINRRQSIGELEVPPLELLHNINGHKMFGFLSPSIIQFIEAQDPSHQCVEYWNHKQVIFGSSSKAIDDSKLTCGSSNNSLVDFRTKVFGVNLIKQEEDEIGERSQSFEKTKLTLEGFLKKASTNELRAMHQLFSSDAQVSQWRATCIKLIEEIQ 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00875 1102 Pfam F/Y-rich N-terminus 862 908 IPR003888 GO:0005634
Car06g00875 1102 ProSiteProfiles JmjN domain profile. 121 162 IPR003349 -
Car06g00875 1102 Pfam JmjC domain, hydroxylase 361 476 IPR003347 -
Car06g00875 1102 ProSiteProfiles FYR domain FYRN motif profile. 853 911 IPR003888 GO:0005634
Car06g00875 1102 PANTHER LYSINE-SPECIFIC DEMETHYLASE 75 1102 - -
Car06g00875 1102 SUPERFAMILY Clavaminate synthase-like 353 513 - -
Car06g00875 1102 MobiDBLite consensus disorder prediction 82 104 - -
Car06g00875 1102 MobiDBLite consensus disorder prediction 194 210 - -
Car06g00875 1102 MobiDBLite consensus disorder prediction 89 104 - -
Car06g00875 1102 MobiDBLite consensus disorder prediction 211 230 - -
Car06g00875 1102 Pfam F/Y rich C-terminus 915 1002 IPR003889 GO:0005634
Car06g00875 1102 Gene3D Cupin 106 478 - -
Car06g00875 1102 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 75 1102 - -
Car06g00875 1102 ProSiteProfiles JmjC domain profile. 331 494 IPR003347 -
Car06g00875 1102 SMART JmjN_1 120 161 IPR003349 -
Car06g00875 1102 SMART fyrn_3 867 911 IPR003888 GO:0005634
Car06g00875 1102 SMART cupin_9 331 494 IPR003347 -
Car06g00875 1102 ProSiteProfiles FYR domain FYRC motif profile. 913 1003 IPR003889 GO:0005634
Car06g00875 1102 Pfam jmjN domain 122 155 IPR003349 -
Car06g00875 1102 Pfam C5HC2 zinc finger 584 636 IPR004198 -
Car06g00875 1102 MobiDBLite consensus disorder prediction 688 710 - -
Car06g00875 1102 MobiDBLite consensus disorder prediction 189 230 - -
Car06g00875 1102 Gene3D - 860 997 - -
Car06g00875 1102 SMART fyrc_3 917 1013 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00875 Car-Chr6 8544788 8552864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00875 129 1102 JUMONJI Transcription Factor Family AT4G20400 45.973 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car06g00875 JmjC 8.1e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00875 - - gmx:100784581 1546.95