Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00874 ATGCAGAGCCAAATTGTGTGTAATGGTTGTAGGAGCATGCTGCTTTACCCTAGAGGGCCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCCCTGTTCCTCCACCTGGGATGGATATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGTGGAGCTACGAGTGTCAGATGTTCCTGCTGTCAAACTCTAAACCTTGCTCCAGCTCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTCTGGAGCTCCCTCAGTCAAATGTGCTGTGTGTCACTATATTACTAATATCAATATGCCCAATGGAAGGCTTCCAATTCCTGTTCGTAGACCTTATGGGACAACCAACTCGGGAACATTACCTTCTACTTCAACATCAATGCCCCAATCTCAGAGTCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGAAAAGAAATAA 516 0.4457 MQSQIVCNGCRSMLLYPRGPTNVCCALCNTITPVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCQTLNLAPAHVPCGNCRTTLMYPSGAPSVKCAVCHYITNINMPNGRLPIPVRRPYGTTNSGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTEKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00874 171 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Car06g00874 171 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Car06g00874 171 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 76 105 IPR005735 -
Car06g00874 171 MobiDBLite consensus disorder prediction 120 139 - -
Car06g00874 171 PANTHER PROTEIN LSD1 1 169 IPR040319 -
Car06g00874 171 MobiDBLite consensus disorder prediction 121 139 - -
Car06g00874 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
Car06g00874 171 Pfam LSD1 zinc finger 79 103 IPR005735 -
Car06g00874 171 Pfam LSD1 zinc finger 46 69 IPR005735 -
Car06g00874 171 PANTHER LSD1-LIKE PROTEIN 1 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00874 Car-Chr6 8530926 8536230 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Car06g00874 zf-LSD1 2.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00874 - - mtr:MTR_8g089310 318.161