Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00845 ATGTCAGAGAGTAAAGACTGTGCTGCCGCCACAGCCACCGCCACCGCCGGCAGTACTCACCGGAGAACATTTCCACGGTCAATTTCATGGACCGATCGATCATCGTCAAATCGAAAACCACCACAACCTACGGCGGCGAACAACAAAAAATCTCGATCGTTGCTTCCACCGCTTCGTCCTCTTTCAATCAACAAACGCAGCATTGAAGAATGGCCAAGCGCCGGATCTGACGATCTCGGAGTTTGGCCACAATCAGAAACACCAAAAGGAAGAGTTTCAATCACCGGTTCAGAGTTTCAATTCAAGAGAGATAAATTAGCTTTCTACGATAAAGAATGTTCTAGAATCGCCGAACACGTTTACCTTGGAAGCGACACCGTTGCGAAGAATCACGAGCTTTTAAGACAGAAAGGAATTACGCACGTGCTTAATTGTGTTGGTTTTGTTTGTCCTGAATATTTCAAAAGGGATTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCAACAGAAGACATCACAAGTATTCTTTACGATGTTTTTGATTACTTTGAAGATGTTAGGTTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACTTCTTTGGTTATTGCTTATCTTATGTGGAGAGAAGGACAAAGCTTTGAAGATGCTTTTCATTATGTCAAAAATGCTCGTGGTGTTACAAATCCTAATATGGGTTTCGCTTCTCAACTTTTGCAGTGTCAGAAAAGAGTGGTAAATTTAAATTCAAATTCAAATTCAAATGCTGCTTCACCTTTGAGTCCTAATTCTGTTCTTAGAATGTTTAGAATGGCTCCTCATTCACCTTATGACCCTCTTCATTTGGTGCCTAAAATGGTTAACAAGCCTTCTGCTAAAGCGCTTGATTCTCGTGGTGCTTTTATTGTTCATGTTCCTTCTGCTATTTATGTTTGGATTGGGAAATTTTGTAGTTCTGTTATGTCTTGTAATGCCAAATCCGCGGCTATTCAGGTTGTTCGTTATGAGAAGGCCAATGCGCCTATTCTTACCATTTCTGAGGATGATGAGCCCATGGAGTTTTGGGCTGCTCTTTCTAATCATCAATTATTATTGGGGAATTTTTATAAGGGTGAGCTGGAGAAGAATGTTTCTCATGAAAGAATGGAGATTGATGATGGTGGTGTTGTTGATAAGGGGGCTCATCCCAGGAAAGTTGATGAGTATGATTTGGATTTTGGAATTTTTAATAAGGCATTAGCTGGTGGTGTTGTTCCACCTTTTTCTGTGACAAATACAGGATCAGAAACTTTGCTTCCTGCTAGAGAAAATAGTTGGGGAAGATTGAGGAGGAAACTTGCTAATAGAATCATGAAAGGGTTGTTTACATCTTCCAAATGCTGTGATATAACATCTCCCAGAGATGAATTAAAGGTGAAAATGGAAGAAGAAGAAGAAAAACAACGTTGTGTTTCATCTGGTTACTTGGATTATTTTATTGATAACAGCTCAGACAATGCTAAAGATTGTCTTGTACTCATGGATCATTGCTTTGGTTCGTCGTTGCCACCGACCCCTCGTCGAAAATCAGTTTCTTTTCCTTGTTCTTTAAGTAACAGCCCGAAATTTGGTTCCAAGTCGCCAACACTTTCGCCTTCCAATTCTGATTATACCAGTTCCTTCTCGTTTTCACCTGTGTCAATGAATTGGTCTGATTTATCGTTCATATCCTCTCGGCTGCCATCGCCTTCTGGCCATGGATCAGCGGAGCAACCCTTTTATGTTAATAAAGATGGATCTTTGATAGAAAGATCCACTTCACTTCACAACGATGCTGCTGTCTCTTCATCTTCAGAAGCACTTTTGATTAATCACATAGTAAGGAAAAATTCTTACAAAGGGTCTAAATCTAAGTCTAACCCTTCCATTGCAGAGCGCCGAGGGAGTAAACTGCTGCCGCAAATGTTGGTACCCTCACATTCACCGCGTGCTCACAAGATCCTGGTAAGATCGCCGACATTCACTTTGTTGGACCGAAATGACAATTTGATGAAGTAG 2058 0.4082 MSESKDCAAATATATAGSTHRRTFPRSISWTDRSSSNRKPPQPTAANNKKSRSLLPPLRPLSINKRSIEEWPSAGSDDLGVWPQSETPKGRVSITGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEDVRLQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFASQLLQCQKRVVNLNSNSNSNAASPLSPNSVLRMFRMAPHSPYDPLHLVPKMVNKPSAKALDSRGAFIVHVPSAIYVWIGKFCSSVMSCNAKSAAIQVVRYEKANAPILTISEDDEPMEFWAALSNHQLLLGNFYKGELEKNVSHERMEIDDGGVVDKGAHPRKVDEYDLDFGIFNKALAGGVVPPFSVTNTGSETLLPARENSWGRLRRKLANRIMKGLFTSSKCCDITSPRDELKVKMEEEEEKQRCVSSGYLDYFIDNSSDNAKDCLVLMDHCFGSSLPPTPRRKSVSFPCSLSNSPKFGSKSPTLSPSNSDYTSSFSFSPVSMNWSDLSFISSRLPSPSGHGSAEQPFYVNKDGSLIERSTSLHNDAAVSSSSEALLINHIVRKNSYKGSKSKSNPSIAERRGSKLLPQMLVPSHSPRAHKILVRSPTFTLLDRNDNLMK 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00845 685 CDD DSP 113 247 - -
Car06g00845 685 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 15 649 - -
Car06g00845 685 MobiDBLite consensus disorder prediction 1 57 - -
Car06g00845 685 ProSiteProfiles Dual specificity protein phosphatase domain profile. 112 254 IPR020422 GO:0006470|GO:0008138
Car06g00845 685 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 103 255 IPR029021 -
Car06g00845 685 SMART dsp_5 112 251 IPR020422 GO:0006470|GO:0008138
Car06g00845 685 SMART VILL_6 274 368 IPR007122 GO:0051015
Car06g00845 685 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 171 232 IPR000387 GO:0016311|GO:0016791
Car06g00845 685 PANTHER MKPA PROTEIN 15 649 - -
Car06g00845 685 MobiDBLite consensus disorder prediction 1 51 - -
Car06g00845 685 Gene3D Severin 274 370 IPR029006 -
Car06g00845 685 SUPERFAMILY Actin depolymerizing proteins 270 374 - -
Car06g00845 685 ProSitePatterns Tyrosine specific protein phosphatases active site. 196 206 IPR016130 GO:0016311|GO:0016791
Car06g00845 685 Pfam Dual specificity phosphatase, catalytic domain 120 250 IPR000340 GO:0008138|GO:0016311
Car06g00845 685 Gene3D Protein tyrosine phosphatase superfamily 89 253 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00845 Car-Chr6 8309073 8311323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00845 40 148 Protein tyrosine phosphatase (PTP) family AT3G55270 47.581 5.82e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00845 - - lja:Lj6g3v0574850.1 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00845 06 8309073 8311323 Car06g00845 06 8309073 8311323 ECH
Car06g00845 06 8309073 8311323 Car05g02082 05 66055573 66058360 PCT