Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00833 ATGGGTGAAGAAAAGGGAAAAGAACAAGTGTTGAGAAAAAAGAAAGAGGAACAAATTAGTCCAAGGAACAACCACGTGTATGGAAGGGAGTTTCAATCTATGTTGGAAGGACTTGATGAAGAAGGGTGTGTTGAAGAACCCTTACATCACTCTGAGAAGAAAAGAAGACTAAGTGTGGATCAAGTCAAGGCTTTGGAGAAGAATTTCGAGGTTGAAAACAAGCTTGAACCTGATAGGAAAGTGAAGCTTGCACAAGAGCTTGGTTTGCAACCAAGACAAGTTGCTGTTTGGTTCCAAAACCGTCGTGCTAGATGGAAAACCAAACAATTGGAAAGAGATTATGGTCTTCTCAAAGCTAATTATGATGCGCTTAAACTTAATTATGACAACCTCCAACGTGACAATGAAACCTTGCTCAAAGAGGTTAAGGAATTGAAATCAAGAATGCAAATAGAAGAAGAAAACACAAGTACTGAAAGCGATGTTTCCGTGAAAGAAGAGTTAATAACTCTACAAGACTCTACAACCACACCAACTTGTGATGAAACCGCCATTCCCGAATCAGATTCAAAGGATTTAAACTACGAATGTTTCAAAAACAGTGATGGTGTCGCTTCTCTGTTTCCTGCGGATTTCAAAGACGGTTCTTCAGATAGCGACTCAAGCGCAATTTTAAACGAAGACAACAATAACAGTCCCAACGCAGCGATTTCTTCATCTGGGGTTCTCCAAAATCACAACTTTTTGATGTCGTCTTCGCAATCTTCAATGAGTTGCTTTCAATTTCAGAAGTATGTGAAAATGGAAGAGCAAAATTTTCTTGGTGGAGATGAGACATGTGATTTCTTCTCAGATGAACAACCACCCACTCTTCAGTGGTATTGTTCGGACGATTGGAATTAA 903 0.3942 MGEEKGKEQVLRKKKEEQISPRNNHVYGREFQSMLEGLDEEGCVEEPLHHSEKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYDALKLNYDNLQRDNETLLKEVKELKSRMQIEEENTSTESDVSVKEELITLQDSTTTPTCDETAIPESDSKDLNYECFKNSDGVASLFPADFKDGSSDSDSSAILNEDNNNSPNAAISSSGVLQNHNFLMSSSQSSMSCFQFQKYVKMEEQNFLGGDETCDFFSDEQPPTLQWYCSDDWN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00833 300 Coils Coil 107 155 - -
Car06g00833 300 Pfam Homeobox associated leucine zipper 108 150 IPR003106 GO:0006355|GO:0043565
Car06g00833 300 SMART HOX_1 51 112 IPR001356 GO:0003677
Car06g00833 300 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Car06g00833 300 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Car06g00833 300 SUPERFAMILY Homeodomain-like 39 110 IPR009057 -
Car06g00833 300 Pfam Homeodomain 53 106 IPR001356 GO:0003677
Car06g00833 300 MobiDBLite consensus disorder prediction 1 23 - -
Car06g00833 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 17 292 - -
Car06g00833 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 292 IPR045224 GO:0003700
Car06g00833 300 CDD homeodomain 53 109 IPR001356 GO:0003677
Car06g00833 300 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Car06g00833 300 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Car06g00833 300 MobiDBLite consensus disorder prediction 218 238 - -
Car06g00833 300 MobiDBLite consensus disorder prediction 1 26 - -
Car06g00833 300 Gene3D - 48 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00833 Car-Chr6 8194806 8197420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00833 20 299 Homeobox Transcription Factor Family AT4G40060 49.164 8.47e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car06g00833 Homeodomain 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00833 K09338 - gmx:100796213 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00833 06 8194806 8197420 Car06g00833 06 8194806 8197420 ECH
Car06g00833 06 8194806 8197420 Car05g02095 05 66164585 66167049 ECH
Car06g00833 06 8194806 8197420 Car05g02095 05 66164585 66167049 PCT