Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00823 ATGGATGAGGAAGAGCACGAGGTTTACGGAGGAGAGATTCCAGACGTGGGAGAGATGGAAGGAGACATCGACATGTCCACCGCCGACGACGAAGCCGCTGGTGTGAAACAGCTCGGCGATATGGACCTCGACGAGATGAGGCGACGATTGAAAGAAATGGAAGACGAAGCTGCTGCCCTTCGCGAGATGCATGCTAAAGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGCAAACAAGGAGGAGACAGATGCTCGCTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGTGGTACAGTCAACAGGGTCACAATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTAACCGAATCTGAATTGCATGGCCGTCAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGATTCAATCCTTACATGGCTTATGGCTTCAGGAGGCCTTATCCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTATAGAAGGGCAACTCGTTACATGCCATACTATTAG 666 0.4835 MDEEEHEVYGGEIPDVGEMEGDIDMSTADDEAAGVKQLGDMDLDEMRRRLKEMEDEAAALREMHAKVEKEIGSVQDPAAVAASQANKEETDARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYPPPYMYSPYGYGKAPRYRRATRYMPYY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00823 221 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 219 - -
Car06g00823 221 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Car06g00823 221 Gene3D - 32 165 IPR012677 -
Car06g00823 221 SMART rrm1_1 94 165 IPR000504 GO:0003723
Car06g00823 221 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Car06g00823 221 SUPERFAMILY RNA-binding domain, RBD 82 190 IPR035979 GO:0003676
Car06g00823 221 MobiDBLite consensus disorder prediction 1 22 - -
Car06g00823 221 CDD RRM_II_PABPs 94 165 - -
Car06g00823 221 Coils Coil 36 70 - -
Car06g00823 221 PANTHER - 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00823 Car-Chr6 8061843 8067417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00823 94 164 Eukaryotic Initiation Factors Gene Family AT2G36660 34.722 3.75e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00823 K14396 - gmx:100789721 376.326