Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00808 ATGCATAATCACACCGAAACACAACAAATAAAATCAAATAACCTGATCATTCCCCTTCACAACCTCTCCAAACTCAACACCCAAATCGATTCTCTTAAACACTTCATATTTCAATCCATCAACACCAATACTCTCCTCTCCAAACACCACTTAGACACACTCTCCAACCAACTCTCCTCATCCATTCGCCACGTCATCACCAACGCTTCCGCACTTCTCGCCGCATCTCCCGTAACCGTAACCGTTTCTCCAACGGTTAACGAACACTCCGAAACTGTGGAACTCAACGCGGTTGAACTTCTCGCAAAGCACTTTCACTTCTGCGAGATTTGCGGGAAAGGATTCACGCGCGACGCGAATATGCGTATGCACATGCGGTCGCACGGGGAACGGTTTAAGACTCGTGAAGCGTTGCGTGGTGGTTGTGGTGTGAGGGAAGCGCGCTTAACGGCGACGCGGTTTTCTTGTCCTTTTGAAGGATGCAAACGGAATAAGTTGCATAAGAAGTTTATGCCGTTGAAGTCGGTGTTGTGTTTGAGGAACCATTTCAAGAGGAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTAAGAGGAAGAGCTTTGCGGTAATTTCGGATTTGAAGAGTCACGTGAAGCAGTGTGGGGGAGAGTCTACGTGGAAGTGTACGTGCGGAACCACGTTTTCAAGAAAAGAGAAACTGTTTGGACACGTGGCAAGGTTTGAGGGGCATTCGCCGGCGGTTGAGGTGGGGGAAGAAGAGAAAAGAAAAACTATGGAGGCGGCGCCGGCGGAAGGGGATAGGTTACCCGAAGGTTTCTTTGATGATTTGGAAAAGTTTTGGGTTTGA 852 0.4847 MHNHTETQQIKSNNLIIPLHNLSKLNTQIDSLKHFIFQSINTNTLLSKHHLDTLSNQLSSSIRHVITNASALLAASPVTVTVSPTVNEHSETVELNAVELLAKHFHFCEICGKGFTRDANMRMHMRSHGERFKTREALRGGCGVREARLTATRFSCPFEGCKRNKLHKKFMPLKSVLCLRNHFKRSHCPKTHTCDRCKRKSFAVISDLKSHVKQCGGESTWKCTCGTTFSRKEKLFGHVARFEGHSPAVEVGEEEKRKTMEAAPAEGDRLPEGFFDDLEKFWV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00808 283 Pfam Zinc-finger of C2H2 type 107 128 - -
Car06g00808 283 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 86 266 - -
Car06g00808 283 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 10 82 - -
Car06g00808 283 SUPERFAMILY beta-beta-alpha zinc fingers 105 129 IPR036236 -
Car06g00808 283 SMART c2h2final6 154 187 IPR013087 -
Car06g00808 283 SMART c2h2final6 106 128 IPR013087 -
Car06g00808 283 SMART c2h2final6 192 213 IPR013087 -
Car06g00808 283 Gene3D Classic Zinc Finger 106 138 - -
Car06g00808 283 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 86 266 IPR044300 GO:0010044|GO:0010447
Car06g00808 283 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 82 IPR044300 GO:0010044|GO:0010447
Car06g00808 283 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Car06g00808 283 Gene3D Classic Zinc Finger 189 265 - -
Car06g00808 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00808 Car-Chr6 7939396 7940265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00808 91 253 C2H2 Transcription Factor Family AT1G34370 57.485 1.52e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car06g00808 zf-met 0.0001 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00808 - - gmx:100781980 337.806