Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00788 ATGACAACAACTATAGATATCTACAAATACAATAGCGACACAAATATCACACATGGGTTCTTAGACCCATTCAATGAAGAACTAATGAAAGCACTTGAACCTTTTATGAAAAATGATTCTTCATCAATCTCTTCTTTCCCACATGAAAAATCAAACTTTCCCTCAAATTTGAATTCCAATTACCTTCGCCACGAAACCCAAACCAGTTCAATTGGGTTAAACCAACTAACCCCATCACAAATCCTTCAAATCCAAACCCAAATCCAAATCCAACAAAACGCAGACTCATTCAAACCCCCCCAAAAAAACCACCTTGCACAAAAGCCCGTTCCAATGAAGCACTTTGGAAATCCCTCAAAACCCACGAAACTCTACCGTGGAGTGAGACAGCGTCATTGGGGAAAATGGGTCGCTGAAATAAGACTTCCAAGAAACCGCACTCGTCTCTGGTTAGGTACATTCGATACTGCAGAAGAAGCAGCTTTTGCTTATGATAACGCAGCTTATAAGCTTAGAGGAGAATTCGCACGTCTCAATTTTCCATACATGCGTCACAATGGAAATTACAATCCTCTCCCTTCTTCGGTTGATTCTAAGCTTCAAGCTATTTGTGAAAGCTTAGCAATTTCTCAAAAACAGGGGAGTCAGGAAATGCTCTGTTCCTCTGTTGAAGAAGTAAAACCTCGTTTTTGTGTTCCTAATATGATTGAGTTGGAGTCTGACGTGGCACAATCAAAAGGTGAATTTGAATTTGTTTGTTCTGAGTTTGAGGATTTTAAGGTTGAGAAAACGGTGTTGTCGGATGAATGTTCACCTGGGTTGTCTTCTCCAGAGTCCGGTGTTACTTTCTTGGACTTCTCAGATTCTAGTCAGTGGGATGAAGTGGAGAATTTTGGGTTGGAGAAGTACCCTTCTGTTGAAATTGATTGGGAAGCCATATGA 942 0.4045 MTTTIDIYKYNSDTNITHGFLDPFNEELMKALEPFMKNDSSSISSFPHEKSNFPSNLNSNYLRHETQTSSIGLNQLTPSQILQIQTQIQIQQNADSFKPPQKNHLAQKPVPMKHFGNPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAAFAYDNAAYKLRGEFARLNFPYMRHNGNYNPLPSSVDSKLQAICESLAISQKQGSQEMLCSSVEEVKPRFCVPNMIELESDVAQSKGEFEFVCSEFEDFKVEKTVLSDECSPGLSSPESGVTFLDFSDSSQWDEVENFGLEKYPSVEIDWEAI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00788 313 Gene3D AP2/ERF domain 124 183 IPR036955 GO:0003700|GO:0006355
Car06g00788 313 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Car06g00788 313 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Car06g00788 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 313 - -
Car06g00788 313 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Car06g00788 313 Pfam AP2 domain 125 174 IPR001471 GO:0003700|GO:0006355
Car06g00788 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 313 - -
Car06g00788 313 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Car06g00788 313 CDD AP2 123 182 IPR001471 GO:0003700|GO:0006355
Car06g00788 313 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00788 Car-Chr6 7784938 7786461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00788 22 313 AP2-EREBP Transcription Factor Family AT4G39780 52.000 7.13e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g00788 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00788 K09286 - gmx:100818839 320.472