Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00787 ATGCAGAACGAAGACGGACAAATCACTGAGCTCTATATTCCTAGGAAGTGTTCTGCTACAAACAGATTGATAACTGCAAAGGATCATGCTTCCGTTCAGATCAACATTGGTCATTTGGATGAATCCGGTGTATACAATGGTCACTTCTCCACTTTCGCCCTCTGTGGCTACACTCGCGCACAGGGAGATGCTGACAGTGGGCTTGATAGATTGTGGCAGAAAAAGAAAACCGAAATTAAGCAGTAA 246 0.4431 MQNEDGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGVYNGHFSTFALCGYTRAQGDADSGLDRLWQKKKTEIKQ 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00787 81 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Car06g00787 81 PIRSF RPS21e 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Car06g00787 81 Gene3D - 1 80 IPR038579 -
Car06g00787 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 - -
Car06g00787 81 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Car06g00787 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00787 Car-Chr6 7773680 7774693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00787 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 81.481 8.98e-50 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00787 K02971 - qsu:112023313 159.073