Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00728 ATGCAAAAAGTTACAAAGGTGGCGAATTATAGAGAAAAGGGAAAAGAGAAAGAAGAGGGAGAAGATCTAACAATGTCAATGCCAATGATGTTTCATGGTGTTAATAGGGAAGGAGAGATGTCAGCTATGGTTTCTGCTTTGACACATGTGATATGTGGTGATGATGGAAGTTCTGTTTTGAAGAGAAGAAGGGAAGATGATGAATCCAATGCTAATATCTCTCCAATTAAGCACCAAGTTGTAGAATGTTCAAGCAACAAAATAACAGAATCTGTATATGAATACAGAACAGACAACATTAACAATGTGAAAAAGGAAGATCAAATAGAAAGAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATATGCTGCAGAGATAAGAGATCCTTTTAAAGCAACAAGAGTTTGGTTAGGAACATTTGAAACAGCTGAAGATGCAGCTATAGCTTATGATCAAGCTTCATTGCGTTTTAGAGGAAACAAAGCAAAACTCAATTTTCCTGAAAATGTTAGCCTCAAGCAACAACCTTTTACTAATCCAACACCAACCTCATTGTCTCCAtcagcttcatattcttcttcatcttcttcttatagttcttcAATTCCTTCAGTTTATTCTACACAGTTGCCAACATGGTCTTCTTCTGGTTATAGCTCCTCTCCCTCAGGCTCATATTAA 690 0.3493 MQKVTKVANYREKGKEKEEGEDLTMSMPMMFHGVNREGEMSAMVSALTHVICGDDGSSVLKRRREDDESNANISPIKHQVVECSSNKITESVYEYRTDNINNVKKEDQIERRKYRGVRQRPWGKYAAEIRDPFKATRVWLGTFETAEDAAIAYDQASLRFRGNKAKLNFPENVSLKQQPFTNPTPTSLSPSASYSSSSSSYSSSIPSVYSTQLPTWSSSGYSSSPSGSY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00728 229 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Car06g00728 229 PANTHER DNA-BINDING DOMAIN 53 220 IPR044808 GO:0003700|GO:0009873
Car06g00728 229 MobiDBLite consensus disorder prediction 1 20 - -
Car06g00728 229 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Car06g00728 229 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Car06g00728 229 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Car06g00728 229 MobiDBLite consensus disorder prediction 175 229 - -
Car06g00728 229 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
Car06g00728 229 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Car06g00728 229 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Car06g00728 229 PANTHER DNA-BINDING DOMAIN PROTEIN 53 220 - -
Car06g00728 229 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00728 Car-Chr6 7263846 7265045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00728 37 175 AP2-EREBP Transcription Factor Family AT5G61890 50.704 3.26e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car06g00728 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00728 - - cam:101505899 397.897