Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00726 ATGGACTTCGACGAGTACGAGTACTTAGAGAAGACGGTGGAGGAACTGCCGGAAGACAGAGATTCATCCAAAAAGAAGAAGACCGACATCGTCGACAACAAATCCGAGAGAACGTACCGGAAGCGCGACGTCGATGACGATCTTGACGCCGAGGACAGGAGGAGCAAGAGGTCGCGTGGTGACGAAGAGAACGGCTCTAAGAAGgatcgcgatagagagagagaccgcgaccgtgaacgtgaccgcgaccgcgaacgATCCTCCGGCCGCCACAGGGAAAGGGAGAAGGACGGAGAGAGAGGTAGCAGAGACAAAGAGAGGGAGAAAGACGGAGAAAGAGGTGGCAGAGACAAAGAGAGAGGCAAGGATGGTGAGAGAGGTAGTAGAGACAAAGAGAAGGATAAAGAAAGGGATAGAGATAGGGAGAGGAGAGATAAGGAAAGGGAAAAGGAACGAGAGAGAAGAGAGAGGGAGAGAGAGAAAGAACGAGAGAGGGAAAAGGATGAAAAAGAGAGACCAAGGAGGAGTATGAGTCGTCCTGAGAGAGATAGAGGAGACAGAGAGCGAGATTTCGAAAACAGAGATGGCAGGAGATTCAGGGATAAAAAAGATAATGTGGAACCCGAGGCAGACCCTGAAAGGGATCAGAGAACTGTTTTCGCCTACCAGATGCCTTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGACGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAAAACCTTGTTCAGTCTAATGCTACCAGTGGAGCTGCCGGTGTAACAGGACCATATGGAGCAGTAGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGGCTAATCTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTGCCTCTTGACATGGAAACAGGACACTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCCGAACAATAAAGGTTTCGTCTGTTACAGATCATGTTGGAAGTCAAGATACAACTGCAAAATCTGCAGACTTTGATGACGATGAAGGTGGATTGACTTTAAATGCCCACTCAAGAGCATTGCTTATGCAAAGGTTGGCTGGTGCCGACATTCCCACAAGGTTTGCTTTTAGCTTGCCTATTGGTAATCCAGGTGTTATACCTGCACAAGTTCTACCGGCACAAGTTATGCCTACCCCTGTAGTAGAACCTGTTGGAGTGCCTAGCGAATGTTTATTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAACCAGATTTTGATTTAGACATTAAAGAGGATGTTGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTATGTCGACAAAAGAAGTGCAGGTTTTGTGTACTTGCGGTTTGAAACAGTGGAAGCATCAAGTGCTGCCCAACGAGCTATGCACATGAGATGGTTTGCACGCAGGTTGATTACAGCTATCTTCATGgaaagtttaATGAATTTGACTCTTCTAAGGATGCTGTCAACTCTAGAGAATTACATGGGAGTTACTGTTTATAAATCGACGTTTCATGTACTTCTCATCATATCCGGGAAGTAA 1785 0.4387 MDFDEYEYLEKTVEELPEDRDSSKKKKTDIVDNKSERTYRKRDVDDDLDAEDRRSKRSRGDEENGSKKDRDRERDRDRERDRDRERSSGRHREREKDGERGSRDKEREKDGERGGRDKERGKDGERGSRDKEKDKERDRDRERRDKEREKERERREREREKEREREKDEKERPRRSMSRPERDRGDRERDFENRDGRRFRDKKDNVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVTGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLTLNAHSRALLMQRLAGADIPTRFAFSLPIGNPGVIPAQVLPAQVMPTPVVEPVGVPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLITAIFMESLMNLTLLRMLSTLENYMGVTVYKSTFHVLLIISGK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00726 594 CDD RRM3_RBM39_like 475 557 - -
Car06g00726 594 MobiDBLite consensus disorder prediction 1 217 - -
Car06g00726 594 CDD RRM1_RBM39_like 218 290 - -
Car06g00726 594 Gene3D - 471 565 IPR012677 -
Car06g00726 594 Gene3D - 315 411 IPR012677 -
Car06g00726 594 SUPERFAMILY RNA-binding domain, RBD 319 556 IPR035979 GO:0003676
Car06g00726 594 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 110 - -
Car06g00726 594 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 107 559 - -
Car06g00726 594 TIGRFAM SF-CC1: splicing factor, CC1-like family 102 440 IPR006509 GO:0003723|GO:0005634|GO:0006397
Car06g00726 594 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 412 494 IPR029123 -
Car06g00726 594 SMART rrm1_1 477 554 IPR000504 GO:0003723
Car06g00726 594 SMART rrm1_1 320 393 IPR000504 GO:0003723
Car06g00726 594 SMART rrm1_1 218 290 IPR000504 GO:0003723
Car06g00726 594 SUPERFAMILY RNA-binding domain, RBD 209 298 IPR035979 GO:0003676
Car06g00726 594 Coils Coil 132 172 - -
Car06g00726 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 286 IPR000504 GO:0003723
Car06g00726 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 552 IPR000504 GO:0003723
Car06g00726 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 391 IPR000504 GO:0003723
Car06g00726 594 PANTHER CC1-LIKE SPLICING FACTOR 1 110 - -
Car06g00726 594 PANTHER CC1-LIKE SPLICING FACTOR 107 559 - -
Car06g00726 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Car06g00726 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 397 IPR000504 GO:0003723
Car06g00726 594 Gene3D - 210 303 IPR012677 -
Car06g00726 594 MobiDBLite consensus disorder prediction 13 216 - -
Car06g00726 594 CDD RRM2_RBM23_RBM39 321 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00726 Car-Chr6 7239419 7245946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00726 291 392 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 2.66e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00726 K13091 - gmx:100818613 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00726 06 7239419 7245946 Car05g02458 05 69689071 69699473 PCT