Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00715 ATGTATGCTTCTACTTCCTTTACTTCACAACTCCTCCATGAGGTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTCCAAGACTCAATTGGTCATCTATCATTAACAAACTCCTCTATTTCTACGAGTAACCACAACTCAACTGACTCATATTTTGGAGTTCGTGAATTTGATGCAAATGCTGTAATGATACTTGCGGTTCTATTGTGTGCTCTTATTTGTTCACTTGTATTAAACTTCATCATTAGATGTGCCTTGAGATCTTTAAATATAGCCATCAACAATGACTCTTCTTTGAATTCAAGTAGCAACCATTCACCAGAATTGGTCAACAAAGGTATCAAGAAAAAAGCTCTTAAGACATTTCCTATAGTGAAATATTCAACTGAGTTGAAACTGCCAAGTTTAGATACAGAGTGTGTGATATGTATCTCAGAGTTCACAAAAGGTGAGAAGGTGCGCATTTTGCCTAAATGCAACCATGGCTTTCACGTTCGTTGCATTGACAAATGGCTAAGAGAACACTCATCATGTCCCAAGTGTAGACAATGTCTTCTTGAAACTTGTCAGAAGATTGTTGAGTCACAACAACCAATTGTGTTGCCAGTTCCAGAAACTATTATAAGGATTCAACCATTAGAGCCTGAAGCTTTGGAACGTAACTATAGAGAAATATAA 678 0.3702 MYASTSFTSQLLHEVLVESHTRRLLFQDSIGHLSLTNSSISTSNHNSTDSYFGVREFDANAVMILAVLLCALICSLVLNFIIRCALRSLNIAINNDSSLNSSSNHSPELVNKGIKKKALKTFPIVKYSTELKLPSLDTECVICISEFTKGEKVRILPKCNHGFHVRCIDKWLREHSSCPKCRQCLLETCQKIVESQQPIVLPVPETIIRIQPLEPEALERNYREI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00715 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Car06g00715 225 SMART ring_2 140 181 IPR001841 -
Car06g00715 225 Pfam Ring finger domain 139 182 IPR001841 -
Car06g00715 225 SUPERFAMILY RING/U-box 118 187 - -
Car06g00715 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
Car06g00715 225 CDD RING-H2_PA-TM-RING 139 182 - -
Car06g00715 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 186 IPR013083 -
Car06g00715 225 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00715 Car-Chr6 7144100 7144948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00715 30 186 C3H Transcription Factor Family AT3G10910 45.509 2.90e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00715 K19040 - gmx:100780127 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00715 06 7144100 7144948 Car05g02470 05 69828435 69829429 PCT