Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00705 ATGGTTAGAGACGATTTATACATAACGGTTCCAAGTTTCTTCCGGTGCCCTATTTCTCTTGACGTGATGAAGTCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCAAGTATTCAACGCTGGCTCGATAACGGCAACAACACTTGTCCCGCCACTATGCAAGTTCTTCAAAGCAAGGATTTCGttcccaaccgtaacttacagagactcatccagatctggtccgattcggTTCGTGACCGAGTCGACTCGCTTGAGTCGTCCGATTCGAGAGTTTCTACCGATTCAGTTGATTCAAGGGATCAACTACTCGTTGCCATCACTGACCTGGAGTCGGGTAGCGAGAACCGGTTCGAATCGCTCGCGAAAATCGTGCGTTTCGGTCAAGATTCCGAAGAGAACTGTGATTTTCTCGCAAGAACGGAAGGTTTCGTGTCTGTGTTGGTTGGTTTTCTTGACAATGTTGATGAAGGACTGGAACGGAGTGTGGAATTGCTTGAACAGATTGTTATGGCGTTGAATTTGGTTTTGAATAAAATCGAGAATCGCGAGGGGTTGAAAAACTCGATTCTGAAGAGCCTGAAAGAGAGGGAGGTACAGTGTTTAGATTCTTTGCTTCTTGTTCTGCAACAAGGAAGCGTTGAATCGAAGATTGCTTCGGCTAGGGTTTTGAAATCCATAGCTGTGGATACAGAATCGAAGCTTCTAATAGCCGAAAAAGAAGGTCTAGTAACCGAATTGCTCAAATTAATCACGCCGGAAAAAGATCTGAACCTAATCGAGAACGCACTCTCGTGTCTGGTGGTAATCTCAACGCCGAAAAGGAACAAATTGAAGCTGGTTCATCTCGAAGCGGTGAAGGTTTTCTCGAACCTTCTAACGTCGAATTTGAATTTTAGCGTTTCGGTGACGGAGAAGGTGTTGAAACTGGTGGAAACGGTGTCGTCAACGAAGGAAGGGAGGTCGGAGATTTGTGAAGAAGCATCGTGCGTGGCAGCGATAGTGAATAAAGTTCTGAAAGTATCCAACGTGGCAACGGAGCACGCTGTTACGATACTTTGGAGTGTGTGTTACTTGTTTCGGGATCAGAAGGCACAAGAAGCCGTTACGAAAGCCAACGGCTTAACGAAGATTTTACTTCTGATGCAAAGCAATTGCACGCCACAAGTGCGTCAAATGTGTGTAGATTTGCTTAAGATTTTTAGGGTTAATTCTAAGTCGTGTCTTTCTTCTTATGATACAAAAACCACTCATATTATGCCCTTTTGA 1275 0.4322 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQSKDFVPNRNLQRLIQIWSDSVRDRVDSLESSDSRVSTDSVDSRDQLLVAITDLESGSENRFESLAKIVRFGQDSEENCDFLARTEGFVSVLVGFLDNVDEGLERSVELLEQIVMALNLVLNKIENREGLKNSILKSLKEREVQCLDSLLLVLQQGSVESKIASARVLKSIAVDTESKLLIAEKEGLVTELLKLITPEKDLNLIENALSCLVVISTPKRNKLKLVHLEAVKVFSNLLTSNLNFSVSVTEKVLKLVETVSSTKEGRSEICEEASCVAAIVNKVLKVSNVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCTPQVRQMCVDLLKIFRVNSKSCLSSYDTKTTHIMPF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00705 424 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Car06g00705 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
Car06g00705 424 PANTHER WDSAM1 PROTEIN 4 424 IPR045185 GO:0061630
Car06g00705 424 CDD RING-Ubox_PUB 14 56 IPR045210 -
Car06g00705 424 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Car06g00705 424 Gene3D - 87 296 IPR011989 -
Car06g00705 424 Gene3D - 298 404 IPR011989 -
Car06g00705 424 SUPERFAMILY ARM repeat 117 406 IPR016024 -
Car06g00705 424 Coils Coil 165 185 - -
Car06g00705 424 SUPERFAMILY RING/U-box 5 77 - -
Car06g00705 424 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Car06g00705 424 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00705 Car-Chr6 7057857 7059591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00705 1 424 U-box Gene Family AT5G64660 55.814 1.05e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00705 - - cam:101496984 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00705 06 7057857 7059591 Car05g02476 05 69872967 69874455 PCT