Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00699 ATGAGTGGAAGTTGCAGAAAGCTATCTTCAAAGTGGGATTCAGGAGATGAATCTGAATTTGCATCTGAGAGTGTTACTAATAGCAATAATTCAAGGCGGCCCTATTTGGCAAGTAATGATATGATAAAACCCAGAATGGAATTTTTAAGCAAGGAACCTTTTTCTGGAGGCAGAGGTTCAAATAGGGATGATGTTAGGAATGAAGACTACAGAGTTTTTGATGCAACAATTGCGCAGGGCACTGATGGAAGTTACGATATGGACATTTCTCCAGGGTTTGAGGAATGGAAAAATAGGAAGCATGGTCAGTCTGCAAAAGATGATTACGGCAGGTCAGTCGATAGGAGTCATAGCCGGAGCCCTCCGCGTGGTTTTAAGTACTCAGCTGTTGACGAAAGGAACAGAACAAGGGCTGGCAGAACGGCACAACCTTGTAGAGATTTTGCTGTTGGGAACTGCAGAAGAGGCAGCCATTGTCATTTCCTTCATCACGATAATCAAAGTTATGAGGATAGCAGGGAAAGTAGACACAGGCAAGATGGGCCTAGATATTCTAATTCCCGGGAGAGTGGGGATTATTCTCTTGCAAGTCAAAGATCTAACGAAGCTTGTATTAATTTCGCAAAGGGAAGGTGTAGAACGGGAGAATCATGCAAGTATGTGCATCATGGCAATTCTGATGGGTTTGACAACAAAGTTTCAGCAGATGAATCATCTAGGCAAAGGGAAATTGATAGAAGACGCTCAGATAATTCATTCAAGCAGGGTGGGCAGCATTATCCAAACCACAGTGGTAACACTCCTTGCAAATTTTTTGCTTTTGGGAATTGCCGGAATGGTAAAGATTGTAGGTTTTCTCATGATAGGCAAGCATTTACGAGCCCTATTGGAAGATTAAGGGATGATAGGTCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGGGCAGACCAAAAATAAGCGATTCAGTAATTCCTAATGGAAGGCCAAGAGATGATAGATGGGGTTCAGATGGCAGCATGGCTGATGTTGGTAAAGTTTGGGATGGTCCAAAGCAGAATGATTTAGTTGCTGTCTCTGATACTGCAAAGATGGTTGAGGACAACAAAAATGGAATAATAGGCGCCGCAGAACCTGGATTTATTGCTTGGCCAATGAGTGATAGACGGGACCATAGCTTTGACAAGAACATAGTGCATAATGAATCACCATTTTCAATTGATAAGAAGGAAGGCAACTGTTCGAAAGCAGAAAATGCAACTGACAACATTCTCATTTCCCAGTCAGTAGGTGGAGGCATTTGGCCCGGTGACGAAACAATGTCACCTGATTGGAATTATGGTGCGAGATCTTCCAGCCATGTTAACGATGAACATGGGCAGAATAAGCAACAAGTTGCTCCAGGACAAGGACTAATTCAGAATTCTCAAAATATATCTGCTTCCCAGGTGGTGGGACAGAGTCAAACAACAGTTTCCATTGTTACTCCAAGAGCAAGAATTATTGAAAGTATACAGAACCAGGAACACTCCACTGAGAAAAATTACATTGTAGAACCAAATACCATGAATGCAAGCCTTTCACAAATTAGTTCAAGAAATACTCCAACTCAGAACGTAGTCAGCAAAGAACAGCTTGCTCAACTTAGCTGCCTCTCAGCATCTCTCGCACATATCCTCGGAACAGATCAGAAGCTCCCTCAACTTCATTCTACATCAAATTCTTATGACGCAAAGGACACTCTCTTTGGAAGCAAAATTGAAGGGTCTGGTGATCCTGTTTCCTTGACATTCATCAAGCCAGATCCTGCTATTGGATTGAAGCAGTATGATACAATGTGTGATAGTATGGGGCCCAAGAATACTAATGCAAGTGTGGTCCCTCCAACCTTTTCTCCTATAAAGATTCCAAAAAATGCGGTTGAGATTCCACCACAGTTATCAAACCTGGGACAAAGTTTTGATGATTCTCGTAAAACTGCCATTTCAGAAGAACCACATGTAAAAAATGAACATTTATTTCATTTACAGCTATGTGAAAACATTAAGGTACAAAATGAGACTAGCAAAATCGTAGCTGAAGAAAAGCCAAGCTCTCAGTCTGAAAATAAAATTACTAAAGAGAATAGTCCTTTGGGAAACATGGACCAAAATGTTGGACCTGAGGACGCCAAGAAAACAAAGGATGCGAAGGGGACTCGTGCATTTAAAATTTCATTGGTAGAGCTCATTAAAGAGCTTCTGAAACCAACATGGAAAGATGGGAAAATCACCAAAGAAGATTATAAAGCAATTGTGAAGAAGGTTACTGATAAAGTGACTGGCACGGTACAGCGGGTACATATTCCTCAGACACAAGAGAAAATTGACCGTTATTTATCAGTTTCGAAACCAAAGCTTATCAAACTTGTACAGGTCAGTCTGTCATATGTAAAGGATTCAAAATCTTGCCTCCCATTTAACTTGGTTTTATAG 2472 0.4114 MSGSCRKLSSKWDSGDESEFASESVTNSNNSRRPYLASNDMIKPRMEFLSKEPFSGGRGSNRDDVRNEDYRVFDATIAQGTDGSYDMDISPGFEEWKNRKHGQSAKDDYGRSVDRSHSRSPPRGFKYSAVDERNRTRAGRTAQPCRDFAVGNCRRGSHCHFLHHDNQSYEDSRESRHRQDGPRYSNSRESGDYSLASQRSNEACINFAKGRCRTGESCKYVHHGNSDGFDNKVSADESSRQREIDRRRSDNSFKQGGQHYPNHSGNTPCKFFAFGNCRNGKDCRFSHDRQAFTSPIGRLRDDRSRSNQGEDQVLGRPKISDSVIPNGRPRDDRWGSDGSMADVGKVWDGPKQNDLVAVSDTAKMVEDNKNGIIGAAEPGFIAWPMSDRRDHSFDKNIVHNESPFSIDKKEGNCSKAENATDNILISQSVGGGIWPGDETMSPDWNYGARSSSHVNDEHGQNKQQVAPGQGLIQNSQNISASQVVGQSQTTVSIVTPRARIIESIQNQEHSTEKNYIVEPNTMNASLSQISSRNTPTQNVVSKEQLAQLSCLSASLAHILGTDQKLPQLHSTSNSYDAKDTLFGSKIEGSGDPVSLTFIKPDPAIGLKQYDTMCDSMGPKNTNASVVPPTFSPIKIPKNAVEIPPQLSNLGQSFDDSRKTAISEEPHVKNEHLFHLQLCENIKVQNETSKIVAEEKPSSQSENKITKENSPLGNMDQNVGPEDAKKTKDAKGTRAFKISLVELIKELLKPTWKDGKITKEDYKAIVKKVTDKVTGTVQRVHIPQTQEKIDRYLSVSKPKLIKLVQVSLSYVKDSKSCLPFNLVL 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00699 823 Pfam RNA-binding, Nab2-type zinc finger 203 222 - -
Car06g00699 823 Pfam RNA-binding, Nab2-type zinc finger 268 287 - -
Car06g00699 823 Pfam RNA-binding, Nab2-type zinc finger 144 163 - -
Car06g00699 823 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Car06g00699 823 SUPERFAMILY CCCH zinc finger 266 288 IPR036855 GO:0046872
Car06g00699 823 MobiDBLite consensus disorder prediction 167 185 - -
Car06g00699 823 Gene3D - 239 300 - -
Car06g00699 823 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 810 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 167 195 - -
Car06g00699 823 ProSiteProfiles Zinc finger C3H1-type profile. 264 290 IPR000571 GO:0046872
Car06g00699 823 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 810 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 96 140 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 294 349 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 1 68 - -
Car06g00699 823 ProSiteProfiles Zinc finger C3H1-type profile. 198 226 IPR000571 GO:0046872
Car06g00699 823 MobiDBLite consensus disorder prediction 691 727 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 229 253 - -
Car06g00699 823 SMART c3hfinal6 199 224 IPR000571 GO:0046872
Car06g00699 823 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Car06g00699 823 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Car06g00699 823 MobiDBLite consensus disorder prediction 294 309 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 691 715 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 229 265 - -
Car06g00699 823 MobiDBLite consensus disorder prediction 19 36 - -
Car06g00699 823 Gene3D - 139 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00699 Car-Chr6 6997864 7001827 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car06g00699 zf-CCCH_2 0.0059 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00699 - K22909 gmx:100783856 858.981