Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00671 ATGGCGAACAAGAGCGTCAAGAAACCTCTTAGCCTCAACGATAGTCACTATCGCTTCCTTCAAGATTTATCTGCACCTCCAAAACCCTCTTCCAAACCCATCGCTAATGATGAATACGAAACACCGATTCAACCCCGACGAAGCGTCGTTCCGCAAGATAACGATGATACTATTCCTCAGTTTTCTGCTATTACCGACTTCGATTCTCCAATCGGTCAAATTTCTCCGGAGAATAATCAACCTGTTAATGTAGAAGAAACTCTTATTCGCAACGAGGTTCCTCAGTTTTTCGATAATCGTGCTCGTAGCCAAGTTTCTCCGGAGAATCGCCAACCAGATAATGTAGAAGAGGCTCCTTGTCGCAATGAAGTTCAACAGTTTTTTGATGATTGTTCACTTCGTCAAAATTTTCGAGGAAATCGTCAACCAGTTAAGGTAGGAGAAGCTTTTCTTCCCAACGAGGTTCCACAGTTTTTGGATAATCATTCTCTTGGTCAAAACTATCTGGAGAATCATCAACCAGTTAAGGATGAAGAAGCTTCTCTTCCCAATGACGTTCCAATGTTTTTTGATAATTGTTCACTTAAGGTGGAAAAGAAGACGAAGGTTAAGGTGCAAGGGAGACGTCGTCTTTGCAAGGTTGCTGACGTAGATGCTGGAAAAAACGTGGCAGTTGAGGAGCCTAGGTTTGATGATCTTGTTGACTTTGATTCGCCTGTTCCGGTACGGAAAAATGTGATTGAGATTGAGGAGAGTGGGGCTAAGAGTGAAATTAGGGATATTTTGAGTGAGCTCAGCTCCAAGTTTGATGCGCTATCAGTGGGCAAGAAGCCGAAGCCGGTGCCAATGCCTGTTGAGTGTTTGGTGGGACGGAGGGAAATTGTTGAAGATGAGGGTTTGGAGTTTGAAAGTGCTGGATCCTCATTTTCTCCAAAACAGGACACCCATGACAGTTCCTCAAAGGATACAAAGAACGATAGTGGTTGTGTTGAGTATGAATCAGATGACTCGGTTCAGGAGAATGATGGTTCTATAACACTGAATGGCCCAAAATCTACATATAAGTTGCAGGCTAAAATTGCGAAAATGTTGTATCCACATCAACGGGAAGGATTGAATTGGCTCTGGTCATTGCATTGTCGGGGTAAAGGTGGAATTTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGATTTCTAGCTGGACTTTTTCATTCCCGTTTAATTACAAGGGCATTGGTTGTGGCCCCAAAAACACTATTGCCGCATTGGATCAAAGAGTTGGCCGTTGTTGGTCTATCTGAGATGACAAAAGAATATTTTGGAACTTGCGCAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATACCAAGTCCTTAAAGGGGTCCCGATATTTTGATGACGAGGAAAGTGAAGACGGCCCTACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTCAAGGAATTGTGGGCATTGTTCAATTTCTGCTGCCCCGAGTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTCCGTGGAAATGATAAAAATGCGTCTGACAGAGAGAAGCGCATTGGTTCATCTATAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAAAGTGAGGTTTTCAATCAAGATACGGAAAAAACAACTGCAAAACTTTCTCAGAAAAGAGAAATCATCGTGTGGCTTCGATTGACCAATATTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAAATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGAGGGCAGCTGAGGACGTGTTGGAAGGGATGGACTCAATACTAAAGCCAGAGGAGGTTAATGTTGCAGAAAAATTGGCGATGCATATAGCAGATGTTGCAGAAACTGATAAGTTTAGAGAGGAGCATGACGTATCATGCAAAATATCTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAAGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCATAACATCCAAAGGCTATGATTTTTTACGAATCGATGGCACAACAAAATCCTGTGACAGAATAAAAACTGTTGATGATTTCCAAGATGGTATTGGAGCTCCAATATTTCTGTTGACATCTCAGGTTGGTGGTTTAGGACTGACACTTACAAAAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGCATTGGTCAAAAGAAAGATGTAATTGTGTATAGACTGATGACATGCGGAACTGTTGAGGAAAAGATCTATAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACATAAAGAACAAACTCGGTACTTCTGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGATGAGGAACACGATTGTCAACATACAGTGGATGGCTCTTTCCAAACACATATAGAATTCCTGAAAAGTCAGGGCATAGCTGGAATTAGCCACCACAGTTTGCTGTTTTCCAAGACAGAGCCAGTTCAAGATGGTCCTGAGGATGAAGTAATAAGGACTCATGGTACTAAACATATTGGAACTtcatcatcattatcatcttcacatGAGCGAATTGTTGACGGGGCTGAGTTTGCCTTTAATCCGAAGGATGTTAATATACGCAAAAAAGATTCTTCTCCCAGCAGTGCTGGTAAATTGACCGAGTTAGAAATCAAGGATAGAATTGTTCGGCTCTCCCAAATGCTAACAAAAACGGAGATGATTTCTAAATTACCTGACAAAGGGGAGAAACTACGGAGACATATTGCAGAGCTGAATCGAGAACTCACTAAACTGAAGATGGAGCAAACAAACGTGATTGATTTAGATGATTTTACCGGTGAATTTGAAAGGGTCATTTTCCAATCCTGGAAAGTCTGCTACATCATCATAGATGATGTGTTTGCCACTGTTTCAAGGTTCCTTTTGCCAAGAGAGGTTTTCAATCTCAGTCTATGCTGCAAGAGTCTTTATGCTCTTGCATCCTCTGAAAAGGTTTGGCTTAATCAATGTGACATTCTATGCATAGTTTCCCACAAAGATCTTGTTGACTGGAGAGTGTTTGTTTCATCTTACAAAGCACTTTGTCGTTTTCTTTTGAGTGTTAAACCATTGCTTGGAATATGGGTTCAACAGAATCCTGAGCTTGGTAACCTTGTTTGTGTAATGCCAGGTTTTGTTTCGGTTATCGGGTGTCGAATAATTCCTCAAGAGATTCCTCCATTGGGGATTCAACATGGTCCTATTCTTTGGTCATGTGTGTTTGAAATTATTTGTGATTTTGATGGTTCAACTATGTTTTTTCTTCATGGGAGGGAGGAAAGTGGAATAGAATGTGTTTATCATGGATCATTAAAATGTGTTAATAGATTTTGTAATTTATTGTTGCTTGAGGTTGAATCTATGAAAAAAGATAATGAGGCAATGGTTCCATTTAGCAAATTAGGTTTTAGGGATAGAAAAAAGTTGCTTGAGGTAACTACTAGTCAAGTAAGATTAGAGGTTCCTGATGTGGAAATTAGATCATTGTTTCCTAGATCAAGAGATGATTTTGCGAATTTTGAGGAAGATTTGGTGCTCTTGAAGGAAAGAAGAGAATTCCTTATTCAGATGACACAAATGAATAAGCTTGATAGTATTCACATTGAAAATAAGGAAAATTCTCAAAGGGAAGTTGTTGGTTCAATGCAATTATTAGAGGTTGATGACATATCAACAAAGAGTCGTGATTATTCAAAGGCTTTCTCTTTTCCTCCACACAATGAGAATGGTCACACACAGTGCATCAAAAGAAAAAGTATTGGTGGATATTTTTGGAGTAGCTTTAAACATATCATTGGAATATCTAGTTCAATTGATGACAATGTTGTCAATATTGATCAACAACATAACATGGTCATGGAAACAAGACACGATCGAAGAACTAGTACAATCGATTGTAGCATTGTCAATAATGATCAACAACACAACACGATCGTGGGAACAAGAAGCCATCAAAGGTTTGATCAGAAGCATAACACGATTGAGGAAACAAGAGACGATCGAACTAGTACAATTGATTGCAGTGTTGTCAATATTGATCACCAACACAGCACAAACCATGAGAAAAAGCATGCAAGGATTCAAGAGTTTCTCAGATCAAGTGACTCACTAAGGCTAACATTAAGGGCCTTAAATGCAAAGTTATCTTCTTTTCGAGGATGGCCAAATATGAACAAAAATTGGTTTGCACTTTACAAGATGCCATTGCAAGTTCCAACAAAAAATCAAGACTATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCATCATAAAAAACCTTCTACAAACAAGCCTAAAATGGCTCTATTTTTTCTTATGCTCTCTTATGAAGAATCCAAGGGACAAAAACTTCTCATTGGAACAAAAATATTGGAAGGAACTAACTATGCATTGCATCCTAATGGTTCATCAATGTTTATAGTGAATATCAACGAGCCTTCATGTGATCCATTTCCTTGGAACAATGATAGGGACTCATTATCACTGAATGCTGAACATGCTTTTTTAGGTGAGGGTATTGCAAATGGTTATGGATTCAAATACCCTGGATCAAAGCCTGGTTCACTATTTGTATTTCAAAATGGTACTATTGCCTTTGTTTGGAAGGAGTCAAGGGATGTTTTGACCCTGCAAAGAGTTAACTTGCAAGAACTTTTGAAGAAAGGAGAAAGGATAGCTTCTTTGCCTCCTATTAACAATTTTTCATATTTGATGAAGTCCAACTTAAATGTGTTTACAAGCTTTTCTAGCACTTCCATTTGGTCTTCTTCACCAAAGTTTGGCTTACCATGA 5181 0.3928 MANKSVKKPLSLNDSHYRFLQDLSAPPKPSSKPIANDEYETPIQPRRSVVPQDNDDTIPQFSAITDFDSPIGQISPENNQPVNVEETLIRNEVPQFFDNRARSQVSPENRQPDNVEEAPCRNEVQQFFDDCSLRQNFRGNRQPVKVGEAFLPNEVPQFLDNHSLGQNYLENHQPVKDEEASLPNDVPMFFDNCSLKVEKKTKVKVQGRRRLCKVADVDAGKNVAVEEPRFDDLVDFDSPVPVRKNVIEIEESGAKSEIRDILSELSSKFDALSVGKKPKPVPMPVECLVGRREIVEDEGLEFESAGSSFSPKQDTHDSSSKDTKNDSGCVEYESDDSVQENDGSITLNGPKSTYKLQAKIAKMLYPHQREGLNWLWSLHCRGKGGILGDDMGLGKTMQICGFLAGLFHSRLITRALVVAPKTLLPHWIKELAVVGLSEMTKEYFGTCAKAREYELQYILQDKGVLLTTYDIVRNNTKSLKGSRYFDDEESEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKDKYETPILRGNDKNASDREKRIGSSIAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSILKPEEVNVAEKLAMHIADVAETDKFREEHDVSCKISFIMSLLDNLIPEGHKVLIFSQTRKMLNLIQECITSKGYDFLRIDGTTKSCDRIKTVDDFQDGIGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEHKEQTRYFCQQDLRELFSLPKEGFDVSVTQRQLDEEHDCQHTVDGSFQTHIEFLKSQGIAGISHHSLLFSKTEPVQDGPEDEVIRTHGTKHIGTSSSLSSSHERIVDGAEFAFNPKDVNIRKKDSSPSSAGKLTELEIKDRIVRLSQMLTKTEMISKLPDKGEKLRRHIAELNRELTKLKMEQTNVIDLDDFTGEFERVIFQSWKVCYIIIDDVFATVSRFLLPREVFNLSLCCKSLYALASSEKVWLNQCDILCIVSHKDLVDWRVFVSSYKALCRFLLSVKPLLGIWVQQNPELGNLVCVMPGFVSVIGCRIIPQEIPPLGIQHGPILWSCVFEIICDFDGSTMFFLHGREESGIECVYHGSLKCVNRFCNLLLLEVESMKKDNEAMVPFSKLGFRDRKKLLEVTTSQVRLEVPDVEIRSLFPRSRDDFANFEEDLVLLKERREFLIQMTQMNKLDSIHIENKENSQREVVGSMQLLEVDDISTKSRDYSKAFSFPPHNENGHTQCIKRKSIGGYFWSSFKHIIGISSSIDDNVVNIDQQHNMVMETRHDRRTSTIDCSIVNNDQQHNTIVGTRSHQRFDQKHNTIEETRDDRTSTIDCSVVNIDHQHSTNHEKKHARIQEFLRSSDSLRLTLRALNAKLSSFRGWPNMNKNWFALYKMPLQVPTKNQDYAGLWGGTFGWHHKKPSTNKPKMALFFLMLSYEESKGQKLLIGTKILEGTNYALHPNGSSMFIVNINEPSCDPFPWNNDRDSLSLNAEHAFLGEGIANGYGFKYPGSKPGSLFVFQNGTIAFVWKESRDVLTLQRVNLQELLKKGERIASLPPINNFSYLMKSNLNVFTSFSSTSIWSSSPKFGLP 1726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00671 1726 Pfam Helicase conserved C-terminal domain 721 833 IPR001650 -
Car06g00671 1726 CDD SF2_C_SNF 713 844 - -
Car06g00671 1726 Gene3D - 620 919 IPR027417 -
Car06g00671 1726 Coils Coil 1031 1051 - -
Car06g00671 1726 SMART ultradead3 359 559 IPR014001 -
Car06g00671 1726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 724 883 IPR001650 -
Car06g00671 1726 CDD DEXHc_ERCC6L 364 601 - -
Car06g00671 1726 PANTHER F-BOX PROTEIN FAMILY-LIKE 1078 1722 IPR040275 -
Car06g00671 1726 Pfam SNF2-related domain 367 671 IPR000330 GO:0005524|GO:0140658
Car06g00671 1726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 376 551 IPR014001 -
Car06g00671 1726 Gene3D - 331 600 IPR038718 -
Car06g00671 1726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 897 IPR027417 -
Car06g00671 1726 MobiDBLite consensus disorder prediction 315 331 - -
Car06g00671 1726 MobiDBLite consensus disorder prediction 47 79 - -
Car06g00671 1726 MobiDBLite consensus disorder prediction 18 79 - -
Car06g00671 1726 MobiDBLite consensus disorder prediction 302 346 - -
Car06g00671 1726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 601 IPR027417 -
Car06g00671 1726 SMART helicmild6 750 833 IPR001650 -
Car06g00671 1726 PANTHER F-BOX PROTEIN FAMILY-LIKE 1078 1722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00671 Car-Chr6 6735972 6746880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00671 364 887 RAD5 or RAD16-like Gene Family AT1G02670 23.986 1.79e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car06g00671 SNF2_N 3.3e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00671 K20093 - gmx:100779283 1439.09