Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00660 ATGTTTGAATCTAAAGACAAAACTGATCAGATGGCTAAGGAAAATGAGTTAGGTATGACAAAGGAAGTTAGTGATGATGGTTCCTCGAGTGTCGAGGCTGGGGATTTAGAATCTCATTCTCGACTTAGTCTGGAGAGGGAGATGGGCTTACCGAGTTGTCGAGTGTGCCAGTGTGCTGAGTCTGATAAACGGGGAGATGCTGCTCTAGGATTTTTGGGCATTACCCCAGTAATAGAAAGGAAGAGGGAAGTAAAGTCTGATGGCGAGGGAATTCCAAAACATACGACTCTTCACAAAAACTTAGAAAGCAGACCTGGGATGATGGAATTTGTAAGCCCTGATGGGGAGGTTTTCGTCTGTAAGAATGATTTGGAAATTGGTTTGTCTTATGAAGATACGTTAATTGAACTTGGTTGTTGTTGTAAAAATGACCTTGGTTTAGTACATTATGCTTGTGCGCTCAAGTGGTTTATCAACCATGGATCTACCATCTGTGAAATATGTGGACATATAGCAAATAATATCAGGATATCTGATTTCAACAAGGTTGTTGGTTCTATAAAAGAGTACGAAGCATTGAGGGAAAGAACTGTCAATGGAGATCCTGGTCCTAATCAAGATCAACCAAATACTGGTGTCGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGATTAAGTGAAATTGCACTATGGTTTTGTCCTCATAATAGCAATAACATTAACAACAATAGCAATGTGGACACGCTTTCACAGGTTGTTTCTGAGCAGGCTTTGAATATTGTCCACGAAGAAGCTGGCCCTGAACAGAATACTGCAACTAAGTGGGCCGTAGAAGGTACAGGGATCCTGCTTGCTACAGGGCTTCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCAAGAAGTGGTCTTCATATCCTGCTTGGAGGGATTTGTGCTTTAACAGTGGTGATTTTTTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATATTGTTTGTTTTCTGGTTTCTTGTTTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGA 1104 0.4239 MFESKDKTDQMAKENELGMTKEVSDDGSSSVEAGDLESHSRLSLEREMGLPSCRVCQCAESDKRGDAALGFLGITPVIERKREVKSDGEGIPKHTTLHKNLESRPGMMEFVSPDGEVFVCKNDLEIGLSYEDTLIELGCCCKNDLGLVHYACALKWFINHGSTICEICGHIANNIRISDFNKVVGSIKEYEALRERTVNGDPGPNQDQPNTGVDPDAVAAIRRQRLSEIALWFCPHNSNNINNNSNVDTLSQVVSEQALNIVHEEAGPEQNTATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARSGLHILLGGICALTVVIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00660 367 ProSiteProfiles Zinc finger RING-CH-type profile. 112 175 IPR011016 GO:0008270
Car06g00660 367 MobiDBLite consensus disorder prediction 1 21 - -
Car06g00660 367 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 366 - -
Car06g00660 367 PANTHER ZINC FINGER, RING-CH-TYPE 16 366 - -
Car06g00660 367 MobiDBLite consensus disorder prediction 1 43 - -
Car06g00660 367 SMART ringv_2 119 169 IPR011016 GO:0008270
Car06g00660 367 MobiDBLite consensus disorder prediction 22 36 - -
Car06g00660 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 171 IPR013083 -
Car06g00660 367 SUPERFAMILY RING/U-box 132 171 - -
Car06g00660 367 Pfam RING-variant domain 134 168 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00660 Car-Chr6 6652527 6657361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00660 11 357 C3H Transcription Factor Family AT5G08750 63.866 2.31e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00660 - - gmx:100805323 529.635