Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00643 ATGGCTGCTCCTCCGGTGAATCCTTTACCAATAGCATACCAAGCATGGACAAGTTTAGCAGTACCAGATTGGTTAAACAAAGGAGACAACACATGGCAAATGGTTGCAGCTACACTTGTCGGAATTCAAAGCATGCCGGGGTTAGTTATCCTCTACGGCAGCATAGTCAAGAAAAAATGGGCCGTAAATTCTGCTTTCATGGCCCTTTATGCTTTTGCGGCAGTATTAATCTGTTGGGTTACGTGGGCTTATAAGATGTCATTCGGTGAGAAACTTTTACCCTTTTGGGGTAAAGCTGGGCCTGCTTTGGGCCAGAAGTTTTTAATAAAACAAGCTGGGCTACCTGCTACTGTGCATTATCATCATGATGGTAGTTTGGAAACTGCTGAAATTGAACCGTTTTATCCAATGGCTACTATGGTTTGGTTTCAAGGTGTTTTTGCGGCTATTTCGGTTATTCTTTTGGCTGGTTCTGTTTTGGCTAGAATGAGTTTTAAGGCGTGGATGATGTTTGTTCCACTTTGGCTTACTTTTTCTTATACTATTGGGGCTTTTAGTTTGTGGGGGGGTGGATTTTTGTTTCAGTGGGGTGTAATGGATTATTCTGGTGGTTATGTTATTCATCTTTCTTCTGGGATTGCTGGATTCACTGCTGCTTATTGGGTGGGGCCAAGATCGAAGAGGGACAGGGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTAGCCGGGGCAGGGTTACTATGGTTGGGATGGGCAGGTTTCAACGGAGGAGATCCCTACTCCGCCAACACAGATTCATCCATGGCGGTGCTAAACACAAACATTTGCGCAGCCACCAGCCTGTTGGTGTGGACATGGCTTGATGTCATATTCTTCAAGAAACCATCCGTTATTGGAGCTGTTCAGGGCATGATCACTGGTCTTGTTTGCATCACTCCCGGCGCCGGTCTTGTTCAAGGATGGGCTGCCATAATAATGGGAGTGCTATCAGGAAGTGTGCCATGGTACACAATGATGGTACTTGGAAAAAAGTTAACAATATTTCAAAAGGTTGATGACACCCTCGCCGTCTTCCACACTCACGCGGTCGCCGGTCTTCTAGGCGGTGTACTCACCGGCCTATTCGCCGAGCCAACACTAAGTACTCTCTTTCTTCCCGTCACCAACTCCAAAGGAGGTATATATGGTGGTCCGGGGGGTGTCCAAATCCTTAAACAAATAGTTGGTGGATTATTCATCATTGGATGGAACATTGTTGCCACTTCAATTATTTGTGTATTTTTAAGTTACATTGTTCCTCTTCGAATGACGGAGGAAGAGTTGCTTATTGGAGATGATGCTGTTCATGGGGAAGAAGCTTATGCCTTATGGGGTGATGGAGAGAAACTTAGCCTTTATAATGATGATACTACACACCATGGAGTTCTGGCATCAAGTGGTGCTACTCAAGTTGTTTAG 1461 0.4517 MAAPPVNPLPIAYQAWTSLAVPDWLNKGDNTWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLIKQAGLPATVHYHHDGSLETAEIEPFYPMATMVWFQGVFAAISVILLAGSVLARMSFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKRDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIIMGVLSGSVPWYTMMVLGKKLTIFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPTLSTLFLPVTNSKGGIYGGPGGVQILKQIVGGLFIIGWNIVATSIICVFLSYIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSLYNDDTTHHGVLASSGATQVV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00643 486 SUPERFAMILY Ammonium transporter 24 437 - -
Car06g00643 486 Pfam Ammonium Transporter Family 32 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Car06g00643 486 Gene3D Ammonium transporter AmtB like domains 12 458 IPR029020 -
Car06g00643 486 PANTHER AMMONIUM TRANSPORTER 17 476 - -
Car06g00643 486 TIGRFAM amt: ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Car06g00643 486 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Car06g00643 486 PANTHER AMMONIUM TRANSPORTER MEP2 17 476 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00643 Car-Chr6 6483415 6486260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00643 137 474 Inorganic Solute Cotransporters AT2G38290 70.710 5.44e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00643 K03320 - gmx:100785993 886.33