Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00623 ATGGGTAGATCTCCCTGTTGTGAGAAAGATCACACCAACAAAGGTGCTTGGTCTAAAGAAGAAGACGACCGTCTCACTAACTACATCAATATTCATGGTGAAGGTTGCTGGAGATCTCTTCCCAAAGCAGCTGGTTTGCTTCGATGTGGCAAAAGCTGCAGACTTAGATGGATTAATTACCTTAGACCTGATCTCAAGAGAGGTAATTTCACTCCCCAAGAAGATGAACTCATCATTAGCCTCCACACTTTCCTTGGTAACAAATGGTCTCAAATTGCTGCGAGATTGCCTGGAAGAACGGACAATGAAATTAAGAACTACTGGAACACGCACATCAAGCGTAAACTATTCACACGCGGAATTGATCCTTCCACACATAAACCACTCAACGGTGGCTCCGCCGCAGTGGTAGCTTCTTCTCAACCTGAATTGCCTGTGGTCCCCACAAGCAACGAGagcagtagtagcagcagcaagaagaagaagaataacaacaaaagCGAGTTTGAGTTATTTAGTAATAATAATATGAACAGAGAAAAAGTGGTTGTAACTGATTCGGGTTGTGTTGAAGAATCAGTGTCAAATAGTAGCAGTGGAGTAACCATAGAAGAAATAGCTCCATATCCACCTCACATAAATTTGGAACTTTCGTTGGCTCCACCTTCTCAACAACAACAAATTTCATTGTATTCGTGGCAAGGAGGTGTGTGTCTTTGTCGACATGCTTTAGGGTTACACGGTAATAATCACCAATTACCTTGTAGCTGTAAAAAACCAATTACTCATCCACATGGAACTCCTTCTGCTACTATTCAACAACCTGCGCCAACCGGCAATGATGTTTTTAAATTTTTCGGAGCCGGGAATTTTAAGTTTTGA 882 0.4014 MGRSPCCEKDHTNKGAWSKEEDDRLTNYINIHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTPQEDELIISLHTFLGNKWSQIAARLPGRTDNEIKNYWNTHIKRKLFTRGIDPSTHKPLNGGSAAVVASSQPELPVVPTSNESSSSSSKKKKNNNKSEFELFSNNNMNREKVVVTDSGCVEESVSNSSSGVTIEEIAPYPPHINLELSLAPPSQQQQISLYSWQGGVCLCRHALGLHGNNHQLPCSCKKPITHPHGTPSATIQQPAPTGNDVFKFFGAGNFKF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00623 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car06g00623 293 CDD SANT 69 112 IPR001005 -
Car06g00623 293 CDD SANT 16 61 IPR001005 -
Car06g00623 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car06g00623 293 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Car06g00623 293 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Car06g00623 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car06g00623 293 Gene3D - 69 116 - -
Car06g00623 293 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 228 - -
Car06g00623 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car06g00623 293 PANTHER TRANSCRIPTION FACTOR MYB7 1 228 - -
Car06g00623 293 MobiDBLite consensus disorder prediction 123 172 - -
Car06g00623 293 Gene3D - 14 66 - -
Car06g00623 293 MobiDBLite consensus disorder prediction 143 158 - -
Car06g00623 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Car06g00623 293 SMART sant 13 63 IPR001005 -
Car06g00623 293 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00623 Car-Chr6 6271748 6273211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00623 1 227 MYB Transcription Factor Family AT2G16720 56.522 1.76e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car06g00623 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00623 K09422 - gmx:100808083 305.834