Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00613 ATGCCTTTTCAAGTGATGGATCAAAGGGGTGTTTCTGACTCCTCCCATTTTTTTGATGATATTGCCTTTCATTCTGAGAGCAATGCTGGATTAAGAAAGCCAAAATACTTCCAAGGAAAGAATGGGATGATAGCACCGCCTGGCAGCACTTTGAGTGCTTCATCACCCTTTGAAGTAAATGCAAAATCTGGATTGCCGATGTCACAGACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGCTGGAGAAGAAGGAATCACTGGTGTATTAAAGGGTTCCATGGAATCGTTGCATTATAATCCCGAATCATGGTCTGATGTGTTTATGCAGTCAGCACCTACCTCATATCGTCTGATTGGGAACAAGGTTGTCGCCAACAATGTTGTCCAGCGTGAAAGTAGTCTATTCTCAAGCTCACTGTCTGATATGTTTAGCAAAAAATTAAATTTATTGGGGAATGATGTTCTGTCCGATCACCACACTACTATTGATTCCCTTCTGGTGGAAGAACCATATAAATCTCTCGAAGATATGGAGGCTGACTCTATAAGGAATCTCCTTCCTGATGAAGATGATCTATTTTCCGGTGTTGCTGACGAGTTAGGTTACAATTTTCGTGCTAGAACAAATGATGACTTGGAAGATTTTGATTTGTTTAGCAGTGGAGGAGGTATGGAGCTGGAAGGAGACGAACATTCAAGTTCAATGAAACGAACAAGTGGTCTGGATGGAGATTATGGTTTGTTTGGAGGTTCTAAAGGAAAGCTTCCTTTTGATGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGCGTAGAAGACTTCGAGCTAAAGACTCTATTTGAGAAATATGGAGATATCCGAACCATGTATACAGCTTGCAAGCATCGCGGGTTTGTTATGATTCATTATTATGACCTAAGGGCTGCACAAAACGCAATGCAAGCACTTCAAAATAAGCCATTGAGGTCAAGGAAACTCGATATACATTATTCAATTCCGAAGGTCAACGCTCCAGAGAGGGATATCGGCCATGGTACGCTGATGTTAACTGCTCTTGATCCATCTGTTACGAATGATGATCTTAAACATATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAAAATCCAGAACTGAAGCATCTCAAATTTGTTGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCGCTTCGGGCATTGAACAGGATTGACATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTCGCGACATGTCTGATGCAGCAGACTCACAAGGGACAAGATGAACGGGATCTTGGTCATAGCATTATTGACAACATGTCGTTAAGACAAAAGCCAACACTGTCTTCTGGAGTAATCGGTTCTGGCTTCTTGGACAATGGATATAGCCAGAGATTTCAATCTGCAATGCGGCAACCTTTGAATGCATTTATTGATAATAATGCATTCTTTTCTACCGATTCTAGCGTTCACAACACTGTGAGAGGGGCGTCCATTGGAAAAGTTTCTGAGTCCCGAAACCTTGTCGATGCAATGAAATTTGCATCTAGTCCAACATTTCATCCTCATTCTTTACCAGAGTATCATGGTAGTTTCGCTAATGGTAGTTCGTATAACTTTTCTAGCACCATTAGCAACAAAGCTGGTAATATAGGTGCTGGAGGAGTGACAGAAGCCTCTAATGGCAGGCATATTCAAGGAATAAGCTCAATTGGGAACTTAGCTGAATTCAATGGTGGAGGTTTATCAGGAAATGGGATGCGCCCACATCATGGACTTAATCAAATGTGGAGCAACCCAAATTTCCATCAGCAACCTTCATCAAGCCCCGTGCTCTGGCAGAAAACGCCGTCATTTGTTAATGGTGGCGCTCCTGGCCTGTCTCAGATGTCAAGCTTTGCTAGAACACCGCCGCATCATATGCTGAGAACACCACAGATGGACCATCATGTTGGATCAGCGCCGGTTGTTACAGCCTCGCCCTGGGAAAGGAAAAATTCTTACTTGGGAGAGTCTCCTGAGGCTTCTGGTTTTCATGGCTCTTGGCAAATGCGCCCGACGGACTTTTCTCCTCATAATAAGATGTTTTCTCATGTTGGTGGGACTGGTGTTGAACTCTCGTCCAGTGCTGGGCAGAGCTCGCCTAATCAGTTGTCACATATTCTCTATGGGAGACAACATCCGACGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAACCTTTATACTCGTAAAAGTGCTGTTAGTGAAGCAAACACCAACAATGTTATTGCTGATAAAAAACAATATGAACTTGACCTTGGCCGCATATTGCGTGGGGAAGACTGCCGAACTACTCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTGCTTGTTGCCATAGATGAGCAATGTCGCGGAACTTATGATTTTCTGTATTTACCAATAGACTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGACTGATCCTGGCCAAATTATTCCTTTCCACCAGGCTTTCCATGGTAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTGCATATGCTCGAATTCAAGGAAGATCTTCTCTTGTTGCTCATTTCCAGAATTCCAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACAGAAGGCCCAAATGCCGGTGATATGGTAAATCAACTTGTTGTTTCACATGAACTTTTTTCCTTGCACTTTACAAAGAAGCTACTGAATTACTGTTGCTGTGATTCCCTGATATTTACCTTCATAGGTCTGCTTTTACTATTATTTACTATGTGA 2871 0.4159 MPFQVMDQRGVSDSSHFFDDIAFHSESNAGLRKPKYFQGKNGMIAPPGSTLSASSPFEVNAKSGLPMSQTNLSEESVEKLPFAGEEGITGVLKGSMESLHYNPESWSDVFMQSAPTSYRLIGNKVVANNVVQRESSLFSSSLSDMFSKKLNLLGNDVLSDHHTTIDSLLVEEPYKSLEDMEADSIRNLLPDEDDLFSGVADELGYNFRARTNDDLEDFDLFSSGGGMELEGDEHSSSMKRTSGLDGDYGLFGGSKGKLPFDEQPSRTLFVRNINSSVEDFELKTLFEKYGDIRTMYTACKHRGFVMIHYYDLRAAQNAMQALQNKPLRSRKLDIHYSIPKVNAPERDIGHGTLMLTALDPSVTNDDLKHIFGFYGEIKEIYENPELKHLKFVEFYDVRAAEAALRALNRIDIAGKQIKLEPGHPRFATCLMQQTHKGQDERDLGHSIIDNMSLRQKPTLSSGVIGSGFLDNGYSQRFQSAMRQPLNAFIDNNAFFSTDSSVHNTVRGASIGKVSESRNLVDAMKFASSPTFHPHSLPEYHGSFANGSSYNFSSTISNKAGNIGAGGVTEASNGRHIQGISSIGNLAEFNGGGLSGNGMRPHHGLNQMWSNPNFHQQPSSSPVLWQKTPSFVNGGAPGLSQMSSFARTPPHHMLRTPQMDHHVGSAPVVTASPWERKNSYLGESPEASGFHGSWQMRPTDFSPHNKMFSHVGGTGVELSSSAGQSSPNQLSHILYGRQHPTTSMSKFDSTNERMRNLYTRKSAVSEANTNNVIADKKQYELDLGRILRGEDCRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRSSLVAHFQNSSLMNEDKRCRPILFHTEGPNAGDMVNQLVVSHELFSLHFTKKLLNYCCCDSLIFTFIGLLLLLFTM 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00613 956 CDD RRM3_MEI2_like 795 880 IPR034454 -
Car06g00613 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 424 IPR000504 GO:0003723
Car06g00613 956 SUPERFAMILY RNA-binding domain, RBD 794 878 IPR035979 GO:0003676
Car06g00613 956 SUPERFAMILY RNA-binding domain, RBD 263 422 IPR035979 GO:0003676
Car06g00613 956 CDD RRM1_MEI2_like 265 340 IPR034453 -
Car06g00613 956 Pfam RNA recognition motif 2 792 888 IPR007201 -
Car06g00613 956 Gene3D - 349 443 IPR012677 -
Car06g00613 956 Gene3D - 259 348 IPR012677 -
Car06g00613 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 418 IPR000504 GO:0003723
Car06g00613 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 332 IPR000504 GO:0003723
Car06g00613 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 339 IPR000504 GO:0003723
Car06g00613 956 SMART rrm1_1 352 420 IPR000504 GO:0003723
Car06g00613 956 SMART rrm1_1 794 870 IPR000504 GO:0003723
Car06g00613 956 SMART rrm1_1 267 335 IPR000504 GO:0003723
Car06g00613 956 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 913 - -
Car06g00613 956 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00613 Car-Chr6 6171925 6179811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00613 263 417 Eukaryotic Initiation Factors Gene Family AT3G16380 27.273 6.29e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00613 - - gmx:100797893 1289.25