Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00592 ATGCATTTCACAGATCTCGATGACACTCCAATGTTCCGCCAACAGCTCCAATACTTGGAGGAAAATGCAGAATCATTGCGCGTTAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGAGGCATATGATGGGGACATTGCATTTGTAAGTTCCCTTGAAAGTTTTGGAGGAGGGCATAGTGATCCTCATTTAATTCCTTTGGAAGGACCTGTAACAAACAAATTTACTATTGCTTTGAGAGAAATCAGTACATATAAGGAACTTCTTCGGTCACAGGTAGAGCACATGCTTGATGACCAGTTACTACAAATTGTCAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAGCGTTTTGACAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCGCTGAGAAAAAGCACAAAGATTGATATTGCCACAGTCATAGAAGAGGAATTGAAGAATGCAAGAACTTCGTTTGAGGAAGCCCGTTTCAATCTGGTTGCTGCTCTTAATAACATTGAGGCCAAGAAGAGATTTGAGTTTTTAGAGGTTTTCACTGGTATTATGGATGCCCATCTTCGATACTTTCAACAGGGATATCAGCTACTACATCAGATGGTACCTTTCATTAGTGAGGTTTTGGATTATGTACAACAGTCAAAAGAAAGTTTTGATAAGGAGCAAATTTCACTTTATAAAAGAATGCAAGAATACAAAAAACAAGTTTATCAAGAAAGTAGGCTGTCCTTGAATGGCCCTTATGGTTCTCCTATTGGAGACTCTGTGCATCCTTTTTCTAGGATATCAAATGAAGTAGTAGATGTAGTAAAGGAATCTGCCGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAGAGATCCTCCAATTTAAGAGGTGATTGGAAAAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTGTACTACTACCGCAAACCATGGGGTGTGTCATATGGCAGCAATCAACCATCTCCAAGGAAGAATAGTGCCGCCGAAAATGGTTCTGGGCTTCTGGGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCACGATGAAAGATCTGTAGCACGTCATACAGTAAATCTGCTGACGTCAACAATCAAGGTTGATGCTGATCAGACAGATTTAAGATTTTGCTTCAGAGTAATTTCGCCATCAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTTATTGCGTCCTTGTTAAGTGTCCAGACACTTGGATCGCCTCTATCAGTTGAGTCAGAAGACGGCGACTCTGACTCTGCCGACAAGATTGATATATTAGAAAGTTCTCCAGATTTTTCTCGCACTGAGGTCGCAAAGTTTGCATCCAAGAATTTCACCCTTAATGACCATTTACGTTCATCTATAAGTATGCAGTTGCATAAACACAGTATGAAGAATGAAAACCCTATTGATGTTCTTAGAAAGGTGAGTGGGAATGACAAATGTGCTGATTGTGGGAAACCTGAACCAGACTGGGCATCTTTAAACCTCGGCATCCTTATATGCATTGAATGCTCTGGTGTACATCGTAATCTTGGTGTGCACATATCAAAAGTAAGATCACTAACACTTGATGTGAAAGTATGGGACTCCTCTGTCTTAAGTATGTTTGAGTCACTGGGCAACCATTTTGCAAACTCAGTTTGGGAGGAGCTGTTATATCCAAGGAGTACTTTGCAAGATGTTGACTCCCCCATTGGTTCATCCAAGGCAAACAGAGACGACCTACTTCATGTAAGAAAACCAAAACATGATGACTCTATTTCATTAAAGGAAAGGTTCATTCACGCAAAGTATGCTGAGAAAATATTTATTTGCCGGACAGAGAAAAACCTTGCACAAGAGATCTTGGAAAGCATCTGTGCAAATGACAAGAAAGCGGTGTACCAGCACATTGTCAAGTCAGATATAAATGTCAATGTCATCAGTAGGCAAGCATTATATGGTGACTCTTTCAACATGGCTTCTTTGATTAATTTAAACGTGTCATCTCAAAGTGAGAATCAGTTGAATGAGGACATACAAGATGGTTCTAGTGTGCTTCACCTGGCTTGCCTAACAAGTGACCCTGTCATGGTGGATCTGCTCCTACAGCATGGGGCAGACATAAACGCCTGTGATTCAAGAGGTCGTACACCACTACATTACTGTATTATCAGAGGGAAGCCCGCAGCTGCAAAAGTGCTTATTTCAAGGGGGGCCAATCCACATGTCGCTGACAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAAACCAGCTGTGTTGGAAATGGAATTATTACTCTCTTGGCAAGCAGATGA 2400 0.4104 MHFTDLDDTPMFRQQLQYLEENAESLRVRCCKFYKGCRKYTEGLGEAYDGDIAFVSSLESFGGGHSDPHLIPLEGPVTNKFTIALREISTYKELLRSQVEHMLDDQLLQIVNVDINEVKEARKRFDKASLVYDQAREKFMSLRKSTKIDIATVIEEELKNARTSFEEARFNLVAALNNIEAKKRFEFLEVFTGIMDAHLRYFQQGYQLLHQMVPFISEVLDYVQQSKESFDKEQISLYKRMQEYKKQVYQESRLSLNGPYGSPIGDSVHPFSRISNEVVDVVKESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVLDSRGMLYYYRKPWGVSYGSNQPSPRKNSAAENGSGLLGRWLSSHYHGGVHDERSVARHTVNLLTSTIKVDADQTDLRFCFRVISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGSPLSVESEDGDSDSADKIDILESSPDFSRTEVAKFASKNFTLNDHLRSSISMQLHKHSMKNENPIDVLRKVSGNDKCADCGKPEPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFESLGNHFANSVWEELLYPRSTLQDVDSPIGSSKANRDDLLHVRKPKHDDSISLKERFIHAKYAEKIFICRTEKNLAQEILESICANDKKAVYQHIVKSDINVNVISRQALYGDSFNMASLINLNVSSQSENQLNEDIQDGSSVLHLACLTSDPVMVDLLLQHGADINACDSRGRTPLHYCIIRGKPAAAKVLISRGANPHVADKEGNTPLKLASETSCVGNGIITLLASR 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00592 799 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Car06g00592 799 CDD BAR_SFC_plant 15 215 IPR035670 -
Car06g00592 799 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 799 - -
Car06g00592 799 Pfam PH domain 294 427 IPR001849 -
Car06g00592 799 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Car06g00592 799 Gene3D Arfaptin homology (AH) domain/BAR domain 5 250 IPR027267 -
Car06g00592 799 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Car06g00592 799 SMART ANK_2a 708 737 IPR002110 GO:0005515
Car06g00592 799 SMART ANK_2a 741 770 IPR002110 GO:0005515
Car06g00592 799 SMART PH_update 293 430 IPR001849 -
Car06g00592 799 Pfam Putative GTPase activating protein for Arf 502 637 IPR001164 GO:0005096
Car06g00592 799 Pfam Ankyrin repeats (many copies) 710 762 IPR002110 GO:0005515
Car06g00592 799 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Car06g00592 799 CDD PH_ACAP 295 432 - -
Car06g00592 799 Pfam BAR domain of APPL family 6 233 - -
Car06g00592 799 ProSiteProfiles BAR domain profile. 1 236 IPR004148 GO:0005515|GO:0005737
Car06g00592 799 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Car06g00592 799 ProSiteProfiles Ankyrin repeat region circular profile. 741 773 - -
Car06g00592 799 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Car06g00592 799 Gene3D - 652 798 IPR036770 -
Car06g00592 799 Coils Coil 118 138 - -
Car06g00592 799 SUPERFAMILY PH domain-like 203 427 - -
Car06g00592 799 Gene3D - 285 436 IPR011993 -
Car06g00592 799 PANTHER CENTAURIN/ARF 1 799 IPR045258 GO:0005096
Car06g00592 799 ProSiteProfiles ARF GTPase-activating proteins domain profile. 499 644 IPR001164 GO:0005096
Car06g00592 799 SUPERFAMILY Ankyrin repeat 653 785 IPR036770 -
Car06g00592 799 Gene3D Arf GTPase activating protein 480 645 IPR038508 -
Car06g00592 799 SMART arf_gap_3 499 645 IPR001164 GO:0005096
Car06g00592 799 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Car06g00592 799 CDD ArfGap 502 631 - -
Car06g00592 799 PRINTS HIV Rev interacting protein signature 511 530 IPR001164 GO:0005096
Car06g00592 799 PRINTS HIV Rev interacting protein signature 530 547 IPR001164 GO:0005096
Car06g00592 799 PRINTS HIV Rev interacting protein signature 553 574 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00592 Car-Chr6 5992187 6011450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00592 509 637 C2H2 Transcription Factor Family AT4G21160 44.615 1.28e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00592 K12489 - gmx:100792517 1247.65